RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 CIB2O75838 187 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 LGI1O95970 557 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 SERPINA1P01009 418 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 CSTAP01040 98 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 OPN1SWP03999 348 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 CD247P20963 164 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 PTAFRP25105 342 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 EFNA4P52798 201 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 CARTPTQ16568 116 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 LRRC23Q53EV4 343 aaPredicted RBP11.26□□□□□ -0.61
LINC00339-202ENST00000416769 CYBRD1Q53TN4 286 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 TSPO2Q5TGU0 170 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 CASP12Q6UXS9 341 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 ZNF836Q6ZNA1 936 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 P2RY8Q86VZ1 359 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 AQP12AQ8IXF9 295 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 CLIP4Q8N3C7 705 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 SLC35B4Q969S0 331 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 CCDC124Q96CT7 223 aaKnown RBP11.26□□□□□ -0.61
LINC00339-202ENST00000416769 LRGUKQ96M69 825 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 MUS81Q96NY9 551 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 FOXN4Q96NZ1 517 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 USB1Q9BQ65 265 aaKnown RBP11.26□□□□□ -0.61
LINC00339-202ENST00000416769 SEC61A2Q9H9S3 476 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 ACER3Q9NUN7 267 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 ASB6Q9NWX5 421 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 TAS2R16Q9NYV7 291 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 MALT1Q9UDY8 824 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 SAMD4AQ9UPU9 718 aaKnown RBP11.26□□□□□ -0.61
LINC00339-202ENST00000416769 MOKQ9UQ07 419 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 CHST2Q9Y4C5 530 aa11.26□□□□□ -0.61
LINC00339-202ENST00000416769 ZC3H12DA2A288 527 aaKnown RBP11.25□□□□□ -0.61
LINC00339-202ENST00000416769 LRP5LA4QPB2 252 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 CDHR4A6H8M9 788 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 UMPSP11172 480 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 IMPDH2P12268 514 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 CDH2P19022 906 aaPredicted RBP11.25□□□□□ -0.61
LINC00339-202ENST00000416769 IL2RGP31785 369 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 OR2B6P58173 313 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 DSCR9P59020 149 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 FLOT2Q14254 428 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 HIKESHIQ53FT3 197 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 MRPL2Q5T653 305 aaKnown RBP11.25□□□□□ -0.61
LINC00339-202ENST00000416769 CYP2R1Q6VVX0 501 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 ZNF771Q7L3S4 317 aaPredicted RBP11.25□□□□□ -0.61
LINC00339-202ENST00000416769 ADGRG3Q86Y34 549 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 ZNF440Q8IYI8 595 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 SMYD1Q8NB12 490 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 FAM71CQ8NEG0 241 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 GPR32P1Q8NGA4 272 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 ST8SIA1Q92185 356 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 PYURFQ96I23 114 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 TRIM15Q9C019 465 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 AMBRA1Q9C0C7 1298 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 EXOSC3Q9NQT5 275 aaKnown RBP11.25□□□□□ -0.61
LINC00339-202ENST00000416769 SLC17A5Q9NRA2 495 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 CHRNA9Q9UGM1 479 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 SLC13A4Q9UKG4 626 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 MGAT4BQ9UQ53 548 aa11.25□□□□□ -0.61
LINC00339-202ENST00000416769 TCRBV5S2A0A599 114 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 ATP6V1B2P21281 511 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 NR4A2P43354 598 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 TUBA1BP68363 451 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 TUBA4AP68366 448 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 PDK3Q15120 406 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 SWI5Q1ZZU3 235 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 GLIPR1L2Q4G1C9 344 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 C1orf146Q5VVC0 180 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 FAM166AQ6J272 317 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 ZNF544Q6NX49 715 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 KLHL17Q6TDP4 642 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 TUBA1AQ71U36 451 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 CNOT9Q92600 299 aaKnown RBP11.24□□□□□ -0.61
LINC00339-202ENST00000416769 PROX1Q92786 737 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 TPD52L3Q96J77 140 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 ARHGDIGQ99819 225 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 BPESC1Q9GZL8 116 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 RLIMQ9NVW2 624 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 EMC3Q9P0I2 261 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 LPAR3Q9UBY5 353 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 KCNS2Q9ULS6 477 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 FLVCR1Q9Y5Y0 555 aa11.24□□□□□ -0.61
LINC00339-202ENST00000416769 TMEM72A0PK05 275 aa11.23□□□□□ -0.61
LINC00339-202ENST00000416769 WIPF1O43516 503 aa11.23□□□□□ -0.61
LINC00339-202ENST00000416769 MRPL33O75394 65 aaKnown RBP11.23□□□□□ -0.61
LINC00339-202ENST00000416769 ZNF682O95780 498 aa11.23□□□□□ -0.61
LINC00339-202ENST00000416769 APEHP13798 732 aaKnown RBP11.23□□□□□ -0.61
LINC00339-202ENST00000416769 GZMKP49863 264 aa11.23□□□□□ -0.61
LINC00339-202ENST00000416769 SLC16A1P53985 500 aa11.23□□□□□ -0.61
LINC00339-202ENST00000416769 CSNK2A1P68400 391 aaPredicted RBP11.23□□□□□ -0.61
LINC00339-202ENST00000416769 CR1LQ2VPA4 569 aa11.23□□□□□ -0.61
LINC00339-202ENST00000416769 IFI44LQ53G44 452 aa11.23□□□□□ -0.61
LINC00339-202ENST00000416769 FKBP9P1Q75LS8 142 aa11.23□□□□□ -0.61
LINC00339-202ENST00000416769 MYPOPQ86VE0 399 aaPredicted RBP11.23□□□□□ -0.61
LINC00339-202ENST00000416769 C10orf67Q8IYJ2 551 aa11.23□□□□□ -0.61
LINC00339-202ENST00000416769 ZCCHC24Q8N2G6 241 aaKnown RBP11.23□□□□□ -0.61
LINC00339-202ENST00000416769 ZIC4Q8N9L1 334 aa11.23□□□□□ -0.61
LINC00339-202ENST00000416769 ZNF563Q8TA94 476 aa11.23□□□□□ -0.61
LINC00339-202ENST00000416769 ZNF385AQ96PM9 386 aaKnown RBP11.23□□□□□ -0.61
LINC00339-202ENST00000416769 SERINC1Q9NRX5 453 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms