RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ATRXP46100 2492 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 PNMA8CA0A1B0GUJ8 204 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 A0A1B0GWA3 101 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 ISPDA4D126 451 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 BHLHE40O14503 412 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 CH25HO95992 272 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 IGHA1P01876 353 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 CRYABP02511 175 aaKnown RBP12.09□□□□□ -0.47
LIMS1-204ENST00000409441 CELA3AP09093 270 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 TSPAN19P0C672 248 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 HK1P19367 917 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 SRD5A2P31213 254 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 ZNF41P51814 821 aaPredicted RBP12.09□□□□□ -0.47
LIMS1-204ENST00000409441 COPZ1P61923 177 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 ACSM1Q08AH1 577 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 QPRTQ15274 297 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 SOWAHCQ53LP3 525 aaPredicted RBP12.09□□□□□ -0.47
LIMS1-204ENST00000409441 SMARCD3Q6STE5 483 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 CXXC5Q7LFL8 322 aaKnown RBP12.09□□□□□ -0.47
LIMS1-204ENST00000409441 BTLAQ7Z6A9 289 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 YRDCQ86U90 279 aaKnown RBP12.09□□□□□ -0.47
LIMS1-204ENST00000409441 FAM109AQ8N4B1 249 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 ZNF563Q8TA94 476 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 ABTB1Q969K4 478 aaPredicted RBP12.09□□□□□ -0.47
LIMS1-204ENST00000409441 KRTAP3-3Q9BYR6 98 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 KRTAP3-2Q9BYR7 98 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 C6orf62Q9GZU0 229 aaPredicted RBP12.09□□□□□ -0.47
LIMS1-204ENST00000409441 EXOSC4Q9NPD3 245 aaKnown RBP12.09□□□□□ -0.47
LIMS1-204ENST00000409441 QPCTLQ9NXS2 382 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 TAS2R10Q9NYW0 307 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 DKKL1Q9UK85 242 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 VDAC3Q9Y277 283 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 MRPS18CQ9Y3D5 142 aaKnown RBP12.09□□□□□ -0.47
LIMS1-204ENST00000409441 BOD1L1Q8NFC6 3051 aa12.09□□□□□ -0.47
LIMS1-204ENST00000409441 A0A087WZY1 265 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 TTLL8A6PVC2 850 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 FAM47E-STBD1D6RA91 191 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 TFECO14948 347 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-204ENST00000409441 HPNP05981 417 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 LIMS3P0CW19 117 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 LIMS4P0CW20 117 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 TCEA1P23193 301 aaKnown RBP12.08□□□□□ -0.48
LIMS1-204ENST00000409441 SLC1A3P43003 542 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 FXYD6P3P58550 94 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 RPS3AP61247 264 aaKnown RBP12.08□□□□□ -0.48
LIMS1-204ENST00000409441 FOXK1P85037 733 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 OXA1LQ15070 435 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 ZNF181Q2M3W8 571 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 ULK3Q6PHR2 472 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 FAM180AQ6UWF9 173 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 LINC00114Q6XXX2 140 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 CADM2Q8N3J6 435 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 KLHL36Q8N4N3 616 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 FAM83FQ8NEG4 500 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-204ENST00000409441 OR52N1Q8NH53 320 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 OR14L1PQ8NHC6 308 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 RNF217Q8TC41 542 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 TMEM234Q8WY98 164 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 UFD1Q92890 307 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 SNRNP40Q96DI7 357 aaKnown RBP12.08□□□□□ -0.48
LIMS1-204ENST00000409441 NUAK2Q9H093 628 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 TSPAN10Q9H1Z9 355 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-204ENST00000409441 ZDHHC11Q9H8X9 412 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 ACKR4Q9NPB9 350 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 HINT3Q9NQE9 182 aaKnown RBP12.08□□□□□ -0.48
LIMS1-204ENST00000409441 C20orf141Q9NUB4 165 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 DAPK2Q9UIK4 370 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 SIGLEC7Q9Y286 467 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 RPH3AQ9Y2J0 694 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-204ENST00000409441 UGT2A1Q9Y4X1 527 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 SPIN1Q9Y657 262 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-204ENST00000409441 HTR3EA5X5Y0 456 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 NPIPA5E9PKD4 350 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 MAGEB3O15480 346 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 PTP4A3O75365 173 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 WISP2O76076 250 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 IL1AP01583 271 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 GP1BBP13224 206 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 PRKCAP17252 672 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 MST1P26927 711 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 TRIM16LQ309B1 348 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 PLPPR5Q32ZL2 321 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 GLYR1Q49A26 553 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-204ENST00000409441 ALG10BQ5I7T1 473 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 WIPI1Q5MNZ9 446 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-204ENST00000409441 LIPKQ5VXJ0 399 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 WBP2NLQ6ICG8 309 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 NIPAL3Q6P499 406 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 MEPCEQ7L2J0 689 aaKnown RBP12.08□□□□□ -0.48
LIMS1-204ENST00000409441 CPOQ8IVL8 374 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 ZNF485Q8NCK3 441 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 OR5M1Q8NGP8 315 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 NPAS1Q99742 590 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 COQ7Q99807 217 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 OR2B2Q9GZK3 357 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 MEPEQ9NQ76 525 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-204ENST00000409441 CMC2Q9NRP2 79 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 RPS6KB2Q9UBS0 482 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 NPIPA1Q9UND3 350 aa12.08□□□□□ -0.48
LIMS1-204ENST00000409441 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms