RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CALHM2Q9HA72 323 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 IMPAD1Q9NX62 359 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 MED29Q9NX70 200 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 RAB26Q9ULW5 256 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 BOD1L1Q8NFC6 3051 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 PRRC2CQ9Y520 2896 aaKnown RBP16.1■□□□□ 0.17
SDC1-203ENST00000403076 ZNF726A6NNF4 738 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 ARPC3O15145 178 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 APEHP13798 732 aaKnown RBP16.09■□□□□ 0.17
SDC1-203ENST00000403076 ACVR1BP36896 505 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 CLDN17P56750 224 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 KEAP1Q14145 624 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 MELKQ14680 651 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 POU4F3Q15319 338 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 NSUN5P2Q63ZY6 315 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 CREB3L2Q70SY1 520 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 WNT2BQ93097 391 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 TXNDC15Q96J42 360 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 TSPAN32Q96QS1 320 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 APOL4Q9BPW4 351 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 Q9H521 79 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 EMC3Q9P0I2 261 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 SH3BGRL2Q9UJC5 107 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 NDRG4Q9ULP0 352 aaKnown RBP16.09■□□□□ 0.17
SDC1-203ENST00000403076 CLEC4AQ9UMR7 237 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 ZNF835Q9Y2P0 537 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 KIAA1549Q9HCM3 1950 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 ZGRF1Q86YA3 2104 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 TEX13CA0A0J9YWL9 993 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 CD8B2A6NJW9 211 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 RIIAD1A6NNX1 92 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 ZNF716A6NP11 495 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 KDM4EB2RXH2 506 aaPredicted RBP16.09■□□□□ 0.17
SDC1-203ENST00000403076 XKRYO14609 159 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 GPR171O14626 319 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 IMPA2O14732 288 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 TRAF3IP2O43734 574 aaPredicted RBP16.09■□□□□ 0.17
SDC1-203ENST00000403076 AKAP8O43823 692 aaKnown RBP16.09■□□□□ 0.17
SDC1-203ENST00000403076 CLIC3O95833 236 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 IFNGP01579 166 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 SDHAP31040 664 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 SLC16A1P53985 500 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 CASP6P55212 293 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 BIDP55957 195 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 PDK3Q15120 406 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 C12orf73Q69YU5 71 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 C3P1Q6ZMU1 363 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 JAZF1Q86VZ6 243 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 DOLPP1Q86YN1 238 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 DEPDC4Q8N2C3 294 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 ARIH2OSQ8N7S6 290 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 OR4K13Q8NH42 304 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 RASD2Q96D21 266 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 PITX2Q99697 317 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 TM9SF2Q99805 663 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 EMC6Q9BV81 110 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 FLVCR1Q9Y5Y0 555 aa16.09■□□□□ 0.17
SDC1-203ENST00000403076 IGHMP01871 453 aa16.08■□□□□ 0.16
SDC1-203ENST00000403076 HIST1H1CP16403 213 aaKnown RBP16.08■□□□□ 0.16
SDC1-203ENST00000403076 PER3P56645 1201 aa16.08■□□□□ 0.16
SDC1-203ENST00000403076 IL5RAQ01344 420 aa16.08■□□□□ 0.16
SDC1-203ENST00000403076 KRR1Q13601 381 aaKnown RBP16.08■□□□□ 0.16
SDC1-203ENST00000403076 FAM122BQ7Z309 247 aa16.08■□□□□ 0.16
SDC1-203ENST00000403076 HDDC2Q7Z4H3 204 aa16.08■□□□□ 0.16
SDC1-203ENST00000403076 TUSC5Q8IXB3 177 aa16.08■□□□□ 0.16
SDC1-203ENST00000403076 SETD9Q8NE22 299 aa16.08■□□□□ 0.16
SDC1-203ENST00000403076 OR52E2Q8NGJ4 325 aa16.08■□□□□ 0.16
SDC1-203ENST00000403076 MUS81Q96NY9 551 aa16.08■□□□□ 0.16
SDC1-203ENST00000403076 BBC3Q96PG8 261 aaPredicted RBP16.08■□□□□ 0.16
SDC1-203ENST00000403076 ZNF385AQ96PM9 386 aaKnown RBP16.08■□□□□ 0.16
SDC1-203ENST00000403076 KLHL21Q9UJP4 597 aa16.08■□□□□ 0.16
SDC1-203ENST00000403076 COL6A6A6NMZ7 2263 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 SLC35F4A4IF30 521 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 A6NIZ1 184 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 NPIPB13A6NJU9 1138 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 NPIPB4C9JG80 1138 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 M0R129 80 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 ARHGEF9O43307 516 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 TXNDC12O95881 172 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 YES1P07947 543 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 ZNF3P17036 446 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 RAP1BP61224 184 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 RAP1AP62834 184 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.07■□□□□ 0.16
SDC1-203ENST00000403076 IL18R1Q13478 541 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 TMEM201Q5SNT2 666 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 FAM205BPQ63HN1 556 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 RTL6Q6ICC9 239 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 OR2A2Q6IF42 318 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 B3GNT6Q6ZMB0 384 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 PTCHD4Q6ZW05 846 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 AAED1Q7RTV5 226 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 C8orf59Q8N0T1 100 aaPredicted RBP16.07■□□□□ 0.16
SDC1-203ENST00000403076 TCEANCQ8N8B7 351 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 ZIC4Q8N9L1 334 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 ASB10Q8WXI3 467 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 OTULINQ96BN8 352 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 IL4I1Q96RQ9 567 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 CMC2Q9NRP2 79 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 GLRX2Q9NS18 164 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms