RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 A0A1B0GTH9 108 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 A0A1W2PNV4 684 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 A6NIZ1 184 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 ZNF726A6NNF4 738 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 TTLL8A6PVC2 850 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 BHLHE40O14503 412 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 TLX2O43763 284 aaPredicted RBP12.71□□□□□ -0.37
SKA1-202ENST00000398452 GNAO1P09471 354 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 NR2C1P13056 603 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 SDHAP31040 664 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 AGFG1P52594 562 aaKnown RBP12.71□□□□□ -0.37
SKA1-202ENST00000398452 RAP1BP61224 184 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 RAP1AP62834 184 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 HSF1Q00613 529 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 RBPJQ06330 500 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 CTU2Q2VPK5 515 aaKnown RBP12.71□□□□□ -0.37
SKA1-202ENST00000398452 ACSM5Q6NUN0 579 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 SLC35D2Q76EJ3 337 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 FCRLAQ7L513 359 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 ZNF786Q8N393 782 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 OR52E2Q8NGJ4 325 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 OR4Q3Q8NH05 313 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 WDYHV1Q96HA8 205 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 IL4I1Q96RQ9 567 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 SF3B5Q9BWJ5 86 aaKnown RBP12.71□□□□□ -0.37
SKA1-202ENST00000398452 TXNIPQ9H3M7 391 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 CMC2Q9NRP2 79 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 SCN3BQ9NY72 215 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 SPRR3Q9UBC9 169 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 SEC14L4Q9UDX3 406 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 IGHV3-15A0A0B4J1V0 119 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 TEX13CA0A0J9YWL9 993 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 PRR23D1E9PI22 279 aaPredicted RBP12.7□□□□□ -0.38
SKA1-202ENST00000398452 H0YC42 278 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 MS4A18H0YCH9 400 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 SURF4O15260 269 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 FZD7O75084 574 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 TSPAN19P0C672 248 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 PRR23D2P0DMB1 279 aaPredicted RBP12.7□□□□□ -0.38
SKA1-202ENST00000398452 ABOP16442 354 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 PTGS2P35354 604 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 ACVR1BP36896 505 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 MLLT10P55197 1068 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 FXYD6P3P58550 94 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 RPL27P61353 136 aaKnown RBP12.7□□□□□ -0.38
SKA1-202ENST00000398452 CSNK2BP67870 215 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.7□□□□□ -0.38
SKA1-202ENST00000398452 LGALS3BPQ08380 585 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 KRR1Q13601 381 aaKnown RBP12.7□□□□□ -0.38
SKA1-202ENST00000398452 MAD2L1BPQ15013 274 aaPredicted RBP12.7□□□□□ -0.38
SKA1-202ENST00000398452 ACKR1Q16570 336 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 ZNF239Q16600 458 aaKnown RBP12.7□□□□□ -0.38
SKA1-202ENST00000398452 MS4A18Q3C1V0 323 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 EEF1A1P5Q5VTE0 462 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 ADCK1Q86TW2 530 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 LSRQ86X29 649 aaPredicted RBP12.7□□□□□ -0.38
SKA1-202ENST00000398452 SIAH3Q8IW03 269 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 KDM8Q8N371 416 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 OR4K13Q8NH42 304 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 TMEM163Q8TC26 289 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 FAR1Q8WVX9 515 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 RFKQ969G6 155 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 ADGRG7Q96K78 797 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 SRXN1Q9BYN0 137 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 FN3KQ9H479 309 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 EMC3Q9P0I2 261 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 KLHL9Q9P2J3 617 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 KLHL13Q9P2N7 655 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 TNFRSF10DQ9UBN6 386 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 ZNF346Q9UL40 294 aaKnown RBP12.7□□□□□ -0.38
SKA1-202ENST00000398452 RNF6Q9Y252 685 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 ADAM18Q9Y3Q7 739 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 ZNF175Q9Y473 711 aa12.7□□□□□ -0.38
SKA1-202ENST00000398452 BOD1L1Q8NFC6 3051 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 LOC102725191A0A1B0GVB3 256 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 NPIPB13A6NJU9 1138 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 NPIPB4C9JG80 1138 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 GPR171O14626 319 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 ARHGEF9O43307 516 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 IGHMP01871 453 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 IFNGR1P15260 489 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 SLC16A1P53985 500 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 ISL1P61371 349 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 RPS7P62081 194 aaKnown RBP12.69□□□□□ -0.38
SKA1-202ENST00000398452 SNRPGP62308 76 aaKnown RBP12.69□□□□□ -0.38
SKA1-202ENST00000398452 TEKQ02763 1124 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 CD47Q08722 323 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 RASGEF1BQ0VAM2 473 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 ITGADQ13349 1161 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 PON3Q15166 354 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 RNPS1Q15287 305 aaKnown RBP12.69□□□□□ -0.38
SKA1-202ENST00000398452 POU4F3Q15319 338 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 LEG1Q6P5S2 330 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 DNM1P34Q6PK57 102 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 CXXC5Q7LFL8 322 aaKnown RBP12.69□□□□□ -0.38
SKA1-202ENST00000398452 GID4Q8IVV7 300 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 CCDC103Q8IW40 242 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 ENTHD1Q8IYW4 607 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 ARIH2OSQ8N7S6 290 aa12.69□□□□□ -0.38
SKA1-202ENST00000398452 LRRC75AQ8NAA5 344 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms