RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 GALNT11Q8NCW6 608 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 DUSP19Q8WTR2 217 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 UFD1Q92890 307 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 OTULINQ96BN8 352 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 TRMT61AQ96FX7 289 aaKnown RBP9.19□□□□□ -0.94
VPS53-202ENST00000389040 GNRHR2Q96P88 292 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 ASPNQ9BXN1 380 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 ENKD1Q9H0I2 346 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 FN3KQ9H479 309 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 GALNT9Q9HCQ5 603 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 ASF1BQ9NVP2 202 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 RPS6KB2Q9UBS0 482 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 SSR3Q9UNL2 185 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 PEX16Q9Y5Y5 336 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 FAM208BQ5VWN6 2430 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 TRAV27A0A087WT01 109 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 ZNF670-ZNF695F2Z2N8 137 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 ADAM10O14672 748 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 ZNF264O43296 627 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 PTP4A3O75365 173 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 UBL4AP11441 157 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 FKBP2P26885 142 aaKnown RBP9.19□□□□□ -0.94
VPS53-202ENST00000389040 ADH6P28332 368 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 ATP6V1E1P36543 226 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 EIF1P41567 113 aaKnown RBP9.19□□□□□ -0.94
VPS53-202ENST00000389040 SLC6A8P48029 635 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 P2RX1P51575 399 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 IFITM3Q01628 133 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 TPBGQ13641 420 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 BICRALQ6AI39 1079 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 DESI1Q6ICB0 168 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 APOOLQ6UXV4 268 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 LINC00114Q6XXX2 140 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 THSD4Q6ZMP0 1018 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 LHFPL3Q86UP9 236 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 ZNF485Q8NCK3 441 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 FAM71CQ8NEG0 241 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 OR4K17Q8NGC6 315 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 ZBTB8AQ96BR9 441 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 JSRP1Q96MG2 331 aaPredicted RBP9.19□□□□□ -0.94
VPS53-202ENST00000389040 JAM3Q9BX67 310 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 LAT2Q9GZY6 243 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 NUAK2Q9H093 628 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 SIAEQ9HAT2 523 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 CMC2Q9NRP2 79 aa9.19□□□□□ -0.94
VPS53-202ENST00000389040 BSNQ9UPA5 3926 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 A0A0G2JMM0 328 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 A0A1W2PPB8 328 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 A0A1W2PRS3 328 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 PINLYPA6NC86 204 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 KIR3DP1A8MWS1 328 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 FAM47E-STBD1D6RA91 191 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 J3QRE1 110 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 AQP7O14520 342 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 SCO2O43819 266 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 ACTL6AO96019 429 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 PAICSP22234 425 aaKnown RBP9.18□□□□□ -0.94
VPS53-202ENST00000389040 GDF1P27539 372 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 RPS19P39019 145 aaKnown RBP9.18□□□□□ -0.94
VPS53-202ENST00000389040 CD79BP40259 229 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 TDGF1P3P51864 188 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 MAP2K6P52564 334 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 CRYZQ08257 329 aaKnown RBP9.18□□□□□ -0.94
VPS53-202ENST00000389040 CBFBQ13951 182 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 SF3B4Q15427 424 aaKnown RBP eCLIP9.18□□□□□ -0.945e-6■■■■■ 28.2
VPS53-202ENST00000389040 NDUFAF6Q330K2 333 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 RNFT1Q5M7Z0 435 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 SLC35F1Q5T1Q4 408 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 MEPCEQ7L2J0 689 aaKnown RBP9.18□□□□□ -0.94
VPS53-202ENST00000389040 OAFQ86UD1 273 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 SNX29P2Q8IUI4 249 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 SLC43A2Q8N370 569 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 KLHL36Q8N4N3 616 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 OR2M3Q8NG83 312 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 OR51A7Q8NH64 312 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 OR5W2Q8NH69 310 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 PHOSPHO1Q8TCT1 267 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 MIB2Q96AX9 1013 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 C1GALT1C1Q96EU7 318 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 MROQ9BYG7 248 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 OR2B2Q9GZK3 357 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 TXNL4BQ9NX01 149 aaKnown RBP9.18□□□□□ -0.94
VPS53-202ENST00000389040 ERVK13-1Q9NX77 482 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 LUZP4Q9P127 313 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 TNFRSF10DQ9UBN6 386 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 DAPK2Q9UIK4 370 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 BAIAP2Q9UQB8 552 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 CHD6Q8TD26 2715 aa9.18□□□□□ -0.94
VPS53-202ENST00000389040 CNTRLQ7Z7A1 2325 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 A0A075B6Q4 140 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 ANKUB1A6NFN9 424 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 RIIAD1A6NNX1 92 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 G3V3Y1 287 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 ETV2O00321 342 aaPredicted RBP9.17□□□□□ -0.94
VPS53-202ENST00000389040 HCRTR2O43614 444 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 HOXD4P09016 255 aaPredicted RBP9.17□□□□□ -0.94
VPS53-202ENST00000389040 ZNF17P17021 662 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 MAGEA5P43359 124 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 DLX5P56178 289 aa9.17□□□□□ -0.94
VPS53-202ENST00000389040 COPZ1P61923 177 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms