RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 HS6ST2Q96MM7 605 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 VSTM2LQ96N03 204 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 JAM3Q9BX67 310 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 TMEM27Q9HBJ8 222 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 DOCK10Q96BY6 2186 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 LOC102723996A0A087X1L8 192 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 NSG1A0A0A6YYJ2 146 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 NPIPA5A0A0B4J1W7 369 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 NPIPA7E9PJI5 369 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 PRKNO60260 465 aaPredicted RBP12.98□□□□□ -0.33
HMGA1-203ENST00000374116 RCBTB2O95199 551 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 APOL3O95236 402 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 NPIPA8P0DM63 369 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 ARSBP15848 533 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 GRK1Q15835 563 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 DCAF10Q5QP82 559 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 WDR88Q6ZMY6 472 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 TMPRSS11FQ6ZWK6 438 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 ZAR1Q86SH2 424 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 GID4Q8IVV7 300 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 ZNF485Q8NCK3 441 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 FANK1Q8TC84 345 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 PTPMT1Q8WUK0 201 aaPredicted RBP12.98□□□□□ -0.33
HMGA1-203ENST00000374116 RIT1Q92963 219 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 DGAT2Q96PD7 388 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 OR52D1Q9H346 318 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 FN3KQ9H479 309 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 HEXA-AS1Q9H8Q6 139 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 FOLH1BQ9HBA9 442 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 SNTG1Q9NSN8 517 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 ATPIF1Q9UII2 106 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 CBLCQ9ULV8 474 aa12.98□□□□□ -0.33
HMGA1-203ENST00000374116 SF3B6Q9Y3B4 125 aaKnown RBP12.98□□□□□ -0.33
HMGA1-203ENST00000374116 ITPR1Q14643 2758 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 C17orf105B2RV13 164 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 IGHA1P01876 353 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 RRASP10301 218 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 ZNF250P15622 560 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 BMP7P18075 431 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 MAKP20794 623 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 GABRA5P31644 462 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 GALNSP34059 522 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 CCL11P51671 97 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 CTBP2P56545 445 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 ACSM1Q08AH1 577 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 FUT7Q11130 342 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 ZSWIM7Q19AV6 140 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 DDI2Q5TDH0 399 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 ARSKQ6UWY0 536 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 NDUFAF7Q7L592 441 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 CXXC5Q7LFL8 322 aaKnown RBP12.97□□□□□ -0.33
HMGA1-203ENST00000374116 COMMD7Q86VX2 200 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 LURAP1LQ8IV03 231 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 TM9SF4Q92544 642 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 CREB3L1Q96BA8 519 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 KCTD7Q96MP8 289 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 SORCS2Q96PQ0 1159 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 LPAR4Q99677 370 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 OR8D2Q9GZM6 311 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 RANBP3Q9H6Z4 567 aaPredicted RBP12.97□□□□□ -0.33
HMGA1-203ENST00000374116 ABCB9Q9NP78 766 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 EMC7Q9NPA0 242 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 MCUBQ9NWR8 336 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 C19orf25Q9UFG5 118 aaPredicted RBP12.97□□□□□ -0.33
HMGA1-203ENST00000374116 MED31Q9Y3C7 131 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 KCNMB2Q9Y691 235 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 CDRT1O95170 752 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 IGHEP01854 428 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 GBX2P52951 348 aaPredicted RBP12.97□□□□□ -0.33
HMGA1-203ENST00000374116 SHEQ5VZ18 495 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 FCRLBQ6BAA4 426 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 SHFQ7M4L6 423 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 CPOQ8IVL8 374 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 LNX2Q8N448 690 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 KLHL36Q8N4N3 616 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 OR52N1Q8NH53 320 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 PFN4Q8NHR9 129 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 THAP3Q8WTV1 239 aaPredicted RBP12.97□□□□□ -0.33
HMGA1-203ENST00000374116 BPIFA2Q96DR5 249 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 C1GALT1C1Q96EU7 318 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 KCNJ15Q99712 375 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 ZNF700Q9H0M5 742 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 HINT3Q9NQE9 182 aaKnown RBP12.97□□□□□ -0.33
HMGA1-203ENST00000374116 IL20RAQ9UHF4 553 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 GSTK1Q9Y2Q3 226 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 CLCA3PQ9Y6N3 262 aa12.97□□□□□ -0.33
HMGA1-203ENST00000374116 NPIPB9F8W1W9 429 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 BHLHE40O14503 412 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 CHP2O43745 196 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 PPM1BO75688 479 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 SLC2A10O95528 541 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 WDPCPO95876 746 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 IGKV1D-16P01601 117 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 TBXA2RP21731 343 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 ZP3P21754 424 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 ITGA3P26006 1051 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 FGF9P31371 208 aaPredicted RBP12.96□□□□□ -0.33
HMGA1-203ENST00000374116 SSTR4P31391 388 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 ATP6V1E1P36543 226 aa12.96□□□□□ -0.33
HMGA1-203ENST00000374116 UCNP55089 124 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms