RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 A0A0A6YYJ9 748 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 TRIM3O75382 744 aaPredicted RBP14.01□□□□□ -0.17
UPF3B-202ENST00000345865 AKR7A3O95154 331 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 ANKRD34CP0C6C1 535 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 BCL2L15Q5TBC7 163 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 FAM199XQ6PEV8 388 aaPredicted RBP14.01□□□□□ -0.17
UPF3B-202ENST00000345865 NANOGNBQ7Z5D8 188 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 CDC20BQ86Y33 519 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 SLC35F3Q8IY50 421 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 SLC25A45Q8N413 288 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 D2HGDHQ8N465 521 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 RELTQ969Z4 430 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 MESP1Q9BRJ9 268 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 TAS2R5Q9NYW4 299 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 MOKQ9UQ07 419 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 SLC6A5Q9Y345 797 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 BGLAPP02818 100 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 ITPKBP27987 946 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 ARL4DP49703 201 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 CLDN12P56749 244 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 BTG1P62324 171 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 FAPQ12884 760 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 YIF1BQ5BJH7 314 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 TIGD3Q6B0B8 471 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 ZNF671Q8TAW3 534 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 GCDHQ92947 438 aaPredicted RBP14□□□□□ -0.17
UPF3B-202ENST00000345865 ADAD1Q96M93 576 aaKnown RBP14□□□□□ -0.17
UPF3B-202ENST00000345865 VN1R1Q9GZP7 353 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 WWTR1Q9GZV5 400 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 SYT4Q9H2B2 425 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 AUNIPQ9H7T9 357 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 ZNF304Q9HCX3 659 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 NUDT15Q9NV35 164 aa14□□□□□ -0.17
UPF3B-202ENST00000345865 ING1Q9UK53 422 aaPredicted RBP14□□□□□ -0.17
UPF3B-202ENST00000345865 IFITM5A6NNB3 132 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 NDUFB5O43674 189 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 GIMD1P0DJR0 217 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 FBLP22087 321 aaKnown RBP13.99□□□□□ -0.17
UPF3B-202ENST00000345865 IL12BP29460 328 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 GZMKP49863 264 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 SHISA6Q6ZSJ9 500 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 LANCL3Q6ZV70 420 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 LIX1LQ8IVB5 337 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 TOMM5Q8N4H5 51 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 ZNF433Q8N7K0 673 aaPredicted RBP13.99□□□□□ -0.17
UPF3B-202ENST00000345865 SLC25A38Q96DW6 304 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 UBE2ZQ9H832 354 aaPredicted RBP13.99□□□□□ -0.17
UPF3B-202ENST00000345865 FRYLO94915 3013 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 ALG1L2C9J202 215 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 POU3F3P20264 500 aaPredicted RBP13.99□□□□□ -0.17
UPF3B-202ENST00000345865 DPP4P27487 766 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 ABCD3P28288 659 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 NDUFA5Q16718 116 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 CHRDL2Q6WN34 429 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 DPY19L4Q7Z388 723 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 KANSL1Q7Z3B3 1105 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 PM20D2Q8IYS1 436 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 PHYHIPQ92561 330 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 AKAP1Q92667 903 aaKnown RBP eCLIP13.99□□□□□ -0.17
UPF3B-202ENST00000345865 OMA1Q96E52 524 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 MRPL48Q96GC5 212 aaKnown RBP13.99□□□□□ -0.17
UPF3B-202ENST00000345865 AMELYQ99218 206 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 PTDSS2Q9BVG9 487 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 FKRPQ9H9S5 495 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 MRTO4Q9UKD2 239 aaKnown RBP13.99□□□□□ -0.17
UPF3B-202ENST00000345865 MKL2Q9ULH7 1088 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 CAMK2AQ9UQM7 478 aa13.99□□□□□ -0.17
UPF3B-202ENST00000345865 C11orf98E9PRG8 122 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 NUDT21O43809 227 aaKnown RBP13.98□□□□□ -0.17
UPF3B-202ENST00000345865 ADRA2CP18825 462 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 CXCR1P25024 350 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 GIFP27352 417 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 SLC6A8P48029 635 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 CCR6P51684 374 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 PLCXD2Q0VAA5 305 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 ALKBH1Q13686 389 aaKnown RBP13.98□□□□□ -0.17
UPF3B-202ENST00000345865 EEF1A1P5Q5VTE0 462 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 SLC6A19Q695T7 634 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 OR1N1Q8NGS0 311 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 SLC41A2Q96JW4 573 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 C12orf10Q9HB07 376 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 CTSFQ9UBX1 484 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 AIPO00170 330 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 ADAM10O14672 748 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 TO15178 435 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 ARHGEF9O43307 516 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 NUDT14O95848 222 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 C1QBP02746 253 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 TCRBP04435 133 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 PRKCAP17252 672 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 DCAF7P61962 342 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 DMWDQ09019 674 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 EMC4Q5J8M3 183 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 UBE2NLQ5JXB2 153 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 ARHGAP40Q5TG30 622 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 HACD4Q5VWC8 232 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 C16orf47Q6ZP98 133 aaPredicted RBP13.98□□□□□ -0.17
UPF3B-202ENST00000345865 FCRLAQ7L513 359 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 NUP54Q7Z3B4 507 aa13.98□□□□□ -0.17
UPF3B-202ENST00000345865 PLXDC1Q8IUK5 500 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms