RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 GRHL3Q8TE85 626 aa15.25■□□□□ 0.03
CPSF4-201ENST00000292476 ZCCHC14Q8WYQ9 949 aaKnown RBP15.25■□□□□ 0.03
CPSF4-201ENST00000292476 NXPE2Q96DL1 559 aa15.25■□□□□ 0.03
CPSF4-201ENST00000292476 SDHAF3Q9NRP4 125 aa15.25■□□□□ 0.03
CPSF4-201ENST00000292476 FLRT3Q9NZU0 649 aa15.25■□□□□ 0.03
CPSF4-201ENST00000292476 KLHL21Q9UJP4 597 aa15.25■□□□□ 0.03
CPSF4-201ENST00000292476 CENPXA8MT69 81 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 FADS1O60427 444 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 IGF2P01344 180 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 PGCP20142 388 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 S100A1P23297 94 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 APEX1P27695 318 aaKnown RBP15.24■□□□□ 0.03
CPSF4-201ENST00000292476 NR4A2P43354 598 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 KIR2DL3P43628 341 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 IFITM2Q01629 132 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 C17orf67Q0P5P2 114 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 CBFBQ13951 182 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 IL18Q14116 193 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 CD226Q15762 336 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 TBRG1Q3YBR2 411 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 CCDC92Q53HC0 331 aaPredicted RBP15.24■□□□□ 0.03
CPSF4-201ENST00000292476 ZNF362Q5T0B9 420 aaPredicted RBP15.24■□□□□ 0.03
CPSF4-201ENST00000292476 TRILQ7L0X0 811 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 TIPARPQ7Z3E1 657 aaKnown RBP15.24■□□□□ 0.03
CPSF4-201ENST00000292476 MS4A15Q8N5U1 240 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 OR10H4Q8NGA5 316 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 OR11G2Q8NGC1 345 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 OR5M3Q8NGP4 307 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 TRAF4Q9BUZ4 470 aaPredicted RBP15.24■□□□□ 0.03
CPSF4-201ENST00000292476 ENKD1Q9H0I2 346 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 CCDC86Q9H6F5 360 aaKnown RBP15.24■□□□□ 0.03
CPSF4-201ENST00000292476 MED20Q9H944 212 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 ADGRL4Q9HBW9 690 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 CYSLTR2Q9NS75 346 aa15.24■□□□□ 0.03
CPSF4-201ENST00000292476 A0A087WUJ7 227 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 A0A1W2PNU3 283 aaPredicted RBP15.23■□□□□ 0.03
CPSF4-201ENST00000292476 ANKRD61A6NGH8 418 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 STMND1H3BQB6 276 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 HCRTR2O43614 444 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 SC5DO75845 299 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 TNFSF15O95150 251 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 CD1AP06126 327 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 RBMS1P29558 406 aaKnown RBP15.23■□□□□ 0.03
CPSF4-201ENST00000292476 CCR4P51679 360 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 GABREP78334 506 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 GGTLC2Q14390 218 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 KLHL12Q53G59 568 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 TIGD3Q6B0B8 471 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 OPN5Q6U736 354 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 KIRREL2Q6UWL6 708 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 APOOLQ6UXV4 268 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 VASH1Q7L8A9 365 aaPredicted RBP15.23■□□□□ 0.03
CPSF4-201ENST00000292476 PXKQ7Z7A4 578 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 OAFQ86UD1 273 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 POMGNT2Q8NAT1 580 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 ZNF563Q8TA94 476 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 THAP3Q8WTV1 239 aaPredicted RBP15.23■□□□□ 0.03
CPSF4-201ENST00000292476 CAPSLQ8WWF8 208 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 HCAR1Q9BXC0 346 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 MFRPQ9BY79 579 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 MMP28Q9H239 520 aa15.23■□□□□ 0.03
CPSF4-201ENST00000292476 SIRT4Q9Y6E7 314 aaPredicted RBP15.23■□□□□ 0.03
CPSF4-201ENST00000292476 SMIM30A4D0T7 59 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 TMEM200CA6NKL6 621 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 TP53I11O14683 189 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 LYRM1O43325 122 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 HPP00738 406 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 SERPINA3P01011 423 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 FBXO45P0C2W1 286 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 FAM157BP0CG42 384 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 P2RX1P51575 399 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 SUMO3P55854 103 aaPredicted RBP15.22■□□□□ 0.03
CPSF4-201ENST00000292476 ACTA2P62736 377 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 ACTG2P63267 376 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 RTP5Q14D33 572 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 DMKNQ6E0U4 476 aaPredicted RBP15.22■□□□□ 0.03
CPSF4-201ENST00000292476 MARCH3Q86UD3 253 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 SYS1Q8N2H4 156 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 GATSQ8NAP1 163 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 MRPL48Q96GC5 212 aaKnown RBP15.22■□□□□ 0.03
CPSF4-201ENST00000292476 IP6K3Q96PC2 410 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 TP63Q9H3D4 680 aaPredicted RBP15.22■□□□□ 0.03
CPSF4-201ENST00000292476 MCCC2Q9HCC0 563 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 ELOA3DA6NLF2 546 aaPredicted RBP15.22■□□□□ 0.03
CPSF4-201ENST00000292476 TFECO14948 347 aaPredicted RBP15.22■□□□□ 0.03
CPSF4-201ENST00000292476 SLC43A1O75387 559 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 OR2J2O76002 312 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 NCR1O76036 304 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 FUT1P19526 365 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 ITPKBP27987 946 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 MSX1P28360 303 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 TALDO1P37837 337 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 NKX2-5P52952 324 aaPredicted RBP15.22■□□□□ 0.03
CPSF4-201ENST00000292476 CLDN20P56880 219 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 RPS7P62081 194 aaKnown RBP15.22■□□□□ 0.03
CPSF4-201ENST00000292476 ZNF85Q03923 595 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 ZNF117Q03924 483 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 CRMP1Q14194 572 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 P2RY14Q15391 338 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 ST3GAL2Q16842 350 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms