RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 WNT3P56703 355 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 BTN2A1Q7KYR7 527 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 DOK4Q8TEW6 326 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 FUNDC2Q9BWH2 189 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 ATG5Q9H1Y0 275 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 SLCO5A1Q9H2Y9 848 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 A0A087WUJ7 227 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 GABRA1P14867 456 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 ACP1P24666 158 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 AQP2P41181 271 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 FAM180BQ6P0A1 224 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 DOK3Q7L591 496 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 GATA6Q92908 595 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 KCNN3Q9UGI6 736 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 TCRBV16S1A1N1A0A5B0 115 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 KRBA1A5PL33 1030 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 FXYD1O00168 92 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 PITPNBP48739 271 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 CSRP3P50461 194 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 PRAMEF20Q5VT98 475 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 AWAT2Q6E213 333 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 ZNF554Q86TJ5 538 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 MKXQ8IYA7 352 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 CSNK2A3Q8NEV1 391 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 TMEM255BQ8WV15 326 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 TMEM203Q969S6 136 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 SF3B5Q9BWJ5 86 aaKnown RBP12.48□□□□□ -0.41
LDLR-201ENST00000252444 METTL9Q9H1A3 318 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 FBXL4Q9UKA2 621 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 TMEM269A0A1B0GVZ9 245 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 ADH7P40394 386 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 RBM39Q14498 530 aaKnown RBP12.48□□□□□ -0.41
LDLR-201ENST00000252444 OLFML2AQ68BL7 652 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 TIGD3Q6B0B8 471 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 SAMD12Q8N8I0 201 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 NKD1Q969G9 470 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 MYOTQ9UBF9 498 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 R4GN57 208 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 VASNQ6EMK4 673 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 HEPHL1Q6MZM0 1159 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 NXF5Q9H1B4 397 aaKnown RBP12.48□□□□□ -0.41
LDLR-201ENST00000252444 V9GY05 133 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 FAM172BPA6NC97 362 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 HTR5AP47898 357 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 ISXQ2M1V0 245 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 Q499Y3 187 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 CT55Q8WUE5 264 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 KCNJ15Q99712 375 aa12.48□□□□□ -0.41
LDLR-201ENST00000252444 ZNF26P17031 533 aaPredicted RBP12.47□□□□□ -0.41
LDLR-201ENST00000252444 DCLRE1CQ96SD1 692 aaKnown RBP12.47□□□□□ -0.41
LDLR-201ENST00000252444 ZNF225Q9UK10 706 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 A0A0B4J2E0 115 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 A0A1B0GX12 115 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 RBMXL2O75526 392 aaKnown RBP12.47□□□□□ -0.41
LDLR-201ENST00000252444 OR2J2O76002 312 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 UBL3O95164 117 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 SIRPAP78324 504 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 SYT14P1Q58G82 188 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 SLC37A3Q8NCC5 494 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 PILRAQ9UKJ1 303 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 PRR33A8MZF0 331 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 ZNF593O00488 134 aaPredicted RBP12.47□□□□□ -0.41
LDLR-201ENST00000252444 SPINT1O43278 529 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 GALP22466 123 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 HMGA2P52926 109 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 OR1C1Q15619 314 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 NHSL2Q5HYW2 709 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 UBE2NLQ5JXB2 153 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 SPATC1Q76KD6 591 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 PRICKLE2Q7Z3G6 844 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 LRRC28Q86X40 367 aaPredicted RBP12.47□□□□□ -0.41
LDLR-201ENST00000252444 CNEP1R1Q8N9A8 125 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 CDCA4Q9BXL8 241 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 ENY2Q9NPA8 101 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 ZNF223Q9UK11 482 aaPredicted RBP12.47□□□□□ -0.41
LDLR-201ENST00000252444 A0A1B0GVC2 190 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 SULT1B1O43704 296 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 DIO1P49895 249 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 FGL1Q08830 312 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 GAB4Q2WGN9 574 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 ZNF750Q32MQ0 723 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 ZNF766Q5HY98 468 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 C22orf42Q6IC83 251 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 HMGN2P46Q86SG4 172 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 C1orf174Q8IYL3 243 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 LNX2Q8N448 690 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 NRIP3Q9NQ35 241 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 MBD2Q9UBB5 411 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 MALT1Q9UDY8 824 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 TCFL5Q9UL49 500 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 GPR52Q9Y2T5 361 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 TRDV1A0A1B0GX56 115 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 J3KTA2 159 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 L7N2F9 121 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 IGF2P01344 180 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 SOX2P48431 317 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 VAMP2P63027 116 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 ZNF791Q3KP31 576 aaPredicted RBP12.47□□□□□ -0.41
LDLR-201ENST00000252444 C4orf36Q96KX1 117 aa12.47□□□□□ -0.41
LDLR-201ENST00000252444 ZFP64Q9NPA5 681 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms