RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 CACNA1SQ13698 1873 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 PIN1Q13526 163 aaPredicted RBP11.82□□□□□ -0.52
USP40-201ENST00000251722 NKAIN1Q4KMZ8 207 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 ZNF628Q5EBL2 1059 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 SLC35D3Q5M8T2 416 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 ZBTB37Q5TC79 503 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 ENTHD1Q8IYW4 607 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 LMNTD1Q8N9Z9 388 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 ADPRHL1Q8NDY3 354 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 LINC00615Q96LM1 132 aaPredicted RBP11.82□□□□□ -0.52
USP40-201ENST00000251722 METTL9Q9H1A3 318 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 C5AR2Q9P296 337 aa11.82□□□□□ -0.52
USP40-201ENST00000251722 A8MVM7 634 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 F5H5K5 113 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 UBFD1O14562 309 aaKnown RBP11.81□□□□□ -0.52
USP40-201ENST00000251722 MAS1P04201 325 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 FURINP09958 794 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 RPL23AP62750 156 aaKnown RBP11.81□□□□□ -0.52
USP40-201ENST00000251722 ZNF684Q5T5D7 378 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 PLCXD3Q63HM9 321 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 C22orf42Q6IC83 251 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 CSNK2A3Q8NEV1 391 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 TCEAL2Q9H3H9 227 aaPredicted RBP11.81□□□□□ -0.52
USP40-201ENST00000251722 TMEM38AQ9H6F2 299 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 SLC22A11Q9NSA0 550 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 RBFOX1Q9NWB1 397 aaKnown RBP11.81□□□□□ -0.52
USP40-201ENST00000251722 A0A1W2PQL4 384 aaPredicted RBP11.81□□□□□ -0.52
USP40-201ENST00000251722 ZNF749O43361 778 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 IGLV3-25P01717 112 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 PSMB5P28074 263 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 ZNF616Q08AN1 781 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 PAGE3Q5JUK9 113 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 SLC22A12Q96S37 553 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 SLC6A7Q99884 636 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 PRRT1Q99946 306 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 FBXO8Q9NRD0 319 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 RYDENQ9NUL5 291 aaKnown RBP11.81□□□□□ -0.52
USP40-201ENST00000251722 MBOAT2Q6ZWT7 520 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 RPS19BP1Q86WX3 136 aaKnown RBP11.81□□□□□ -0.52
USP40-201ENST00000251722 LINC00518Q8N0U6 118 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 FRMD1Q8N878 549 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 OBP2BQ9NPH6 170 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 MKRN2OSH3BPM6 223 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 TRIM77I1YAP6 450 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 POU3F1Q03052 451 aaPredicted RBP11.81□□□□□ -0.52
USP40-201ENST00000251722 ZNF92Q03936 586 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 MRPL2Q5T653 305 aaKnown RBP11.81□□□□□ -0.52
USP40-201ENST00000251722 DPY19L2P1Q6NXN4 242 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 SGPP2Q8IWX5 399 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 ZNF321PQ8N8H1 164 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 GOT1L1Q8NHS2 421 aaPredicted RBP11.81□□□□□ -0.52
USP40-201ENST00000251722 C14orf79Q96F83 325 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 P2RY12Q9H244 342 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 PLEKHJ1Q9NW61 149 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 FBXL4Q9UKA2 621 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 DOCK2Q92608 1830 aa11.81□□□□□ -0.52
USP40-201ENST00000251722 TMED7-TICAM2A0A0A6YYA0 188 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 LRP5LA4QPB2 252 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 MYOGP15173 224 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 CPT2P23786 658 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 PTAFRP25105 342 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 TMEM176BQ3YBM2 270 aaPredicted RBP11.8□□□□□ -0.52
USP40-201ENST00000251722 ATPAF1Q5TC12 328 aaPredicted RBP11.8□□□□□ -0.52
USP40-201ENST00000251722 DPY19L2P2Q6ZN68 376 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 GRINAQ7Z429 371 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 OR1E3Q8WZA6 343 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 UPRTQ96BW1 309 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 MOGAT1Q96PD6 335 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 CPPED1Q9BRF8 314 aaPredicted RBP11.8□□□□□ -0.52
USP40-201ENST00000251722 EGLN1Q9GZT9 426 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 TMED7Q9Y3B3 224 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 PIGFQ07326 219 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 HBMQ6B0K9 141 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 OR10K2Q6IF99 312 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 ZNF322Q6U7Q0 402 aaPredicted RBP11.8□□□□□ -0.52
USP40-201ENST00000251722 ALKAL2Q6UX46 152 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 GALNT10Q86SR1 603 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 SUMF2Q8NBJ7 301 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 NLGN4YQ8NFZ3 816 aaPredicted RBP11.8□□□□□ -0.52
USP40-201ENST00000251722 ADIPOR1Q96A54 375 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 DUS3LQ96G46 650 aaKnown RBP11.8□□□□□ -0.52
USP40-201ENST00000251722 SULT4A1Q9BR01 284 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 OR2S2Q9NQN1 319 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 CD8B2A6NJW9 211 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 TMEM212A6NML5 194 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 METTL12A8MUP2 240 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 SLC16A7O60669 478 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 RAB40ALP0C0E4 278 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 CD8BP10966 210 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 ACP2P11117 423 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 CAPZBP47756 277 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 GRB2P62993 217 aaKnown RBP11.8□□□□□ -0.52
USP40-201ENST00000251722 TCTE3Q8IZS6 198 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 OR5D16Q8NGK9 328 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 SLC37A2Q8TED4 501 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 CHTF18Q8WVB6 975 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 RAB40AQ8WXH6 277 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 SLC25A32Q9H2D1 315 aa11.8□□□□□ -0.52
USP40-201ENST00000251722 C6orf106Q9H6K1 298 aaPredicted RBP11.8□□□□□ -0.52
USP40-201ENST00000251722 KPTNQ9Y664 436 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms