RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 OR7A5Q15622 319 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 CDKN3Q16667 212 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 KDM8Q8N371 416 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 SLC2A12Q8TD20 617 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 ST6GALNAC5Q9BVH7 336 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 HRASLSQ9HDD0 168 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 SDHAF2Q9NX18 166 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 FBXO9Q9UK97 447 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 PPIL1Q9Y3C6 166 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 IDSB3KWA1 339 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 RBMXL2O75526 392 aaKnown RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 CEACAM5P06731 702 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 ZNF14P17017 642 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 HNRNPA2B1P22626 353 aaKnown RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 SNU13P55769 128 aaKnown RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 SEC61A1P61619 476 aaKnown RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 OR51Q1Q8NH59 317 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 RLN3Q8WXF3 142 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 SMIM3Q9BZL3 60 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 C20orf85Q9H1P6 137 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 PPA2Q9H2U2 334 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 PPP4R1LQ9P1A2 415 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 FBXL4Q9UKA2 621 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 VDAC3Q9Y277 283 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 A0A1W2PS29 197 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 MEGF11A6BM72 1044 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 LGALS8O00214 317 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 SDC3O75056 442 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 EGFP01133 1207 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 UBL4AP11441 157 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 ZNF362Q5T0B9 420 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 FBXO42Q6P3S6 717 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 FAM122CQ6P4D5 195 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 LRRC69Q6ZNQ3 347 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 TMUB2Q71RG4 321 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 AVL9Q8NBF6 648 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 CCL4L1Q8NHW4 92 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 MAP6Q96JE9 813 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 OR10A5Q9H207 317 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 POLMQ9NP87 494 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 SLC6A20Q9NP91 592 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 SAGE1Q9NXZ1 904 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 PLEKHB1Q9UF11 243 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 RHBDD3Q9Y3P4 386 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 FITM1A5D6W6 292 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 C2orf72A6NCS6 295 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 CSTBP04080 98 aaKnown RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 ACTBP60709 375 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 ACTG1P63261 375 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 CCINQ13939 588 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 OR51S1Q8NGJ8 323 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 HIST1H2AAQ96QV6 131 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 VRK1Q99986 396 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 SEMA6CQ9H3T2 930 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 TRIM64A6NGJ6 449 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 B8ZZF3 427 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 NID1P14543 1247 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 PRPS1P60891 318 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 HHEXQ03014 270 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 TSSK4Q6SA08 328 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 GPA33Q99795 319 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 SLC38A1Q9H2H9 487 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 WDR90Q96KV7 1748 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 SLC33A1O00400 549 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 NPC1O15118 1278 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 KNG1P01042 644 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 DPTQ07507 201 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 TDGQ13569 410 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 KIRREL2Q6UWL6 708 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 CAMKMTQ7Z624 323 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 SCGB3A2Q96PL1 93 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 PHB2Q99623 299 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 PRRG4Q9BZD6 226 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 NOTCH4Q99466 2003 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 RFXAPO00287 272 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 CD14P08571 375 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 PTHLHP12272 177 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 CLDN20P56880 219 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 HERV-K104P61576 105 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 EEF1A2Q05639 463 aaKnown RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 GPNMBQ14956 572 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 C1QTNF12Q5T7M4 302 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 TRAPPC6BQ86SZ2 158 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 GIMAP5Q96F15 307 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 LMF2Q9BU23 707 aaKnown RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 RGCCQ9H4X1 137 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 AUNIPQ9H7T9 357 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 THAP10Q9P2Z0 257 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 A0A1B0GTH9 108 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 PHYHO14832 338 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 LILRB3O75022 631 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 PAPLNO95428 1278 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 ERCC1P07992 297 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 UBBP0CG47 229 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 UBCP0CG48 685 aaKnown RBP4.24□□□□□ -1.73
VPS13C-201ENST00000249837 HTR2AP28223 471 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 RGS19P49795 217 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 TNK1Q13470 666 aa4.24□□□□□ -1.73
VPS13C-201ENST00000249837 ZXDCQ2QGD7 858 aaPredicted RBP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms