RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 TCN1P20061 433 aaPredicted RBP16.72■□□□□ 0.27
CLN3-262ENST00000637699 SLC1A6P48664 564 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 ACTG1P63261 375 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 LARS2Q15031 903 aaKnown RBP16.72■□□□□ 0.27
CLN3-262ENST00000637699 RPS26P11Q5JNZ5 115 aaPredicted RBP16.72■□□□□ 0.27
CLN3-262ENST00000637699 ELFN2Q5R3F8 820 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 IL17RDQ8NFM7 739 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 SEMA6DQ8NFY4 1073 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 KTI12Q96EK9 354 aaPredicted RBP16.72■□□□□ 0.27
CLN3-262ENST00000637699 OXGR1Q96P68 337 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 SORT1Q99523 831 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 PTDSS2Q9BVG9 487 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 MRPL37Q9BZE1 423 aaKnown RBP16.72■□□□□ 0.27
CLN3-262ENST00000637699 HIF1ANQ9NWT6 349 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 CALML5Q9NZT1 146 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 REV1Q9UBZ9 1251 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 ZNF232Q9UNY5 417 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 USP22Q9UPT9 525 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 CHST2Q9Y4C5 530 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 DSPPQ9NZW4 1301 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 BIRC5O15392 142 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 SYNGR3O43761 229 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 NR4A1P22736 598 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 COL8A2P25067 703 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 CRATP43155 626 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 CRISP3P54108 245 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 HOXC5Q00444 222 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 EGR4Q05215 589 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 MSMPQ1L6U9 139 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 RNF220Q5VTB9 566 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 CLDND2Q8NHS1 167 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 SLC38A5Q8WUX1 472 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 ZFAND2BQ8WV99 257 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 TMEM186Q96B77 213 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 MS4A3Q96HJ5 214 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 SLC6A13Q9NSD5 602 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 PNPOQ9NVS9 261 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 AIG1Q9NVV5 245 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 B3GAT1Q9P2W7 334 aa16.71■□□□□ 0.27
CLN3-262ENST00000637699 FAM157AC9JC47 383 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 M0R233 179 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 M0R3G1 203 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 RFXANKO14593 260 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 TM9SF1O15321 606 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 HLA-HP01893 362 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 CD79AP11912 226 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 GPR6P46095 362 aaPredicted RBP16.7■□□□□ 0.26
CLN3-262ENST00000637699 MVDP53602 400 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 PIGFQ07326 219 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 LRRC74AQ0VAA2 488 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 PHYHD1Q5SRE7 291 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 CARD17Q5XLA6 110 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 OGFOD2Q6N063 350 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 THSD4Q6ZMP0 1018 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 DEF8Q6ZN54 512 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 CCDC36Q8IYA8 594 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 PIK3C3Q8NEB9 887 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 MRPL24Q96A35 216 aaKnown RBP16.7■□□□□ 0.26
CLN3-262ENST00000637699 OR2M2Q96R28 347 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 ZBTB18Q99592 522 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 SYT3Q9BQG1 590 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 SPATA9Q9BWV2 254 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 MS4A5Q9H3V2 200 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 MEAF6Q9HAF1 191 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 KCNK9Q9NPC2 374 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 TREM2Q9NZC2 230 aa16.7■□□□□ 0.26
CLN3-262ENST00000637699 ZNF99A8MXY4 864 aaPredicted RBP16.69■□□□□ 0.26
CLN3-262ENST00000637699 M0R082 166 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 WNT9BO14905 357 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 HPXP02790 462 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 BGNP21810 368 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 CBLP22681 906 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 ALDH3B1P43353 468 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 SEC24CP53992 1094 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 DSTNP60981 165 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 POU3F1Q03052 451 aaPredicted RBP16.69■□□□□ 0.26
CLN3-262ENST00000637699 SHQ1Q6PI26 577 aaKnown RBP16.69■□□□□ 0.26
CLN3-262ENST00000637699 C3orf56Q8N813 242 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 ZNF417Q8TAU3 575 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 ZNF418Q8TF45 676 aaPredicted RBP16.69■□□□□ 0.26
CLN3-262ENST00000637699 GCDHQ92947 438 aaPredicted RBP16.69■□□□□ 0.26
CLN3-262ENST00000637699 TAAR8Q969N4 342 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 TMEM19Q96HH6 336 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 LRRC37BQ96QE4 947 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 ZNF587Q96SQ5 575 aaPredicted RBP16.69■□□□□ 0.26
CLN3-262ENST00000637699 ARMC7Q9H6L4 198 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 CACYBPQ9HB71 228 aaKnown RBP16.69■□□□□ 0.26
CLN3-262ENST00000637699 B3GNT2Q9NY97 397 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 GRIP1Q9Y3R0 1128 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 SPEF1Q9Y4P9 236 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 NOX1Q9Y5S8 564 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 MEGF8Q7Z7M0 2845 aa16.69■□□□□ 0.26
CLN3-262ENST00000637699 AIM2O14862 343 aa16.68■□□□□ 0.26
CLN3-262ENST00000637699 MSMBP08118 114 aa16.68■□□□□ 0.26
CLN3-262ENST00000637699 SAGP10523 405 aaPredicted RBP16.68■□□□□ 0.26
CLN3-262ENST00000637699 EGR1P18146 543 aa16.68■□□□□ 0.26
CLN3-262ENST00000637699 EVX1P49640 407 aa16.68■□□□□ 0.26
CLN3-262ENST00000637699 MAD2L1BPQ15013 274 aaPredicted RBP16.68■□□□□ 0.26
CLN3-262ENST00000637699 GSG1Q2KHT4 349 aa16.68■□□□□ 0.26
CLN3-262ENST00000637699 TRMT5Q32P41 509 aaKnown RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms