RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ADAD1Q96M93 576 aaKnown RBP16.14■□□□□ 0.17
CLN3-259ENST00000637551 WFIKKN1Q96NZ8 548 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 MOGAT1Q96PD6 335 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 ACTR6Q9GZN1 396 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 OBP2BQ9NPH6 170 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 MEPEQ9NQ76 525 aaPredicted RBP16.14■□□□□ 0.17
CLN3-259ENST00000637551 TAS2R1Q9NYW7 299 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 GMPR2Q9P2T1 348 aaKnown RBP16.14■□□□□ 0.17
CLN3-259ENST00000637551 STX18Q9P2W9 335 aaKnown RBP16.14■□□□□ 0.17
CLN3-259ENST00000637551 FAM32AQ9Y421 112 aaKnown RBP16.14■□□□□ 0.17
CLN3-259ENST00000637551 ATP5HO75947 161 aa16.13■□□□□ 0.17
CLN3-259ENST00000637551 ADAP00813 363 aa16.13■□□□□ 0.17
CLN3-259ENST00000637551 NCK1P16333 377 aa16.13■□□□□ 0.17
CLN3-259ENST00000637551 TNFRSF1BP20333 461 aa16.13■□□□□ 0.17
CLN3-259ENST00000637551 MPGP29372 298 aa16.13■□□□□ 0.17
CLN3-259ENST00000637551 RASSF2P50749 326 aa16.13■□□□□ 0.17
CLN3-259ENST00000637551 LTBQ06643 244 aa16.13■□□□□ 0.17
CLN3-259ENST00000637551 C1DQ13901 141 aaKnown RBP16.13■□□□□ 0.17
CLN3-259ENST00000637551 BEX5Q5H9J7 111 aa16.13■□□□□ 0.17
CLN3-259ENST00000637551 BHLHA15Q7RTS1 189 aaPredicted RBP16.13■□□□□ 0.17
CLN3-259ENST00000637551 RNF148Q8N7C7 305 aa16.13■□□□□ 0.17
CLN3-259ENST00000637551 ZNF433Q8N7K0 673 aaPredicted RBP16.13■□□□□ 0.17
CLN3-259ENST00000637551 LINC01560Q8TB33 94 aa16.13■□□□□ 0.17
CLN3-259ENST00000637551 ZNF385AQ96PM9 386 aaKnown RBP16.13■□□□□ 0.17
CLN3-259ENST00000637551 MAGIXQ9H6Y5 334 aa16.13■□□□□ 0.17
CLN3-259ENST00000637551 MAN2C1Q9NTJ4 1040 aa16.13■□□□□ 0.17
CLN3-259ENST00000637551 NDUFAF4Q9P032 175 aa16.13■□□□□ 0.17
CLN3-259ENST00000637551 ALPK2Q86TB3 2170 aa16.13■□□□□ 0.17
CLN3-259ENST00000637551 MS4A18H0YCH9 400 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 FFAR1O14842 300 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 SLC43A1O75387 559 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 HIST1H2ABP04908 130 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 HOXB1P14653 301 aaPredicted RBP16.12■□□□□ 0.17
CLN3-259ENST00000637551 IGHV1-2P23083 117 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 NTF4P34130 210 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 SLC9A3P48764 834 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 TRAP1Q12931 704 aaKnown RBP16.12■□□□□ 0.17
CLN3-259ENST00000637551 GK3PQ14409 553 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 TAF11Q15544 211 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 MS4A18Q3C1V0 323 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 NHLRC1Q6VVB1 395 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 HIST3H2AQ7L7L0 130 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 SLC46A3Q7Z3Q1 461 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 PIWIL3Q7Z3Z3 882 aaKnown RBP16.12■□□□□ 0.17
CLN3-259ENST00000637551 NKAIN4Q8IVV8 208 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 TMEM255BQ8WV15 326 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 HIST1H2ACQ93077 130 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 MCUR1Q96AQ8 359 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 SGTBQ96EQ0 304 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 LURAP1Q96LR2 239 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 MUS81Q96NY9 551 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 ZNF347Q96SE7 839 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 NMNAT1Q9HAN9 279 aaPredicted RBP16.12■□□□□ 0.17
CLN3-259ENST00000637551 IL1RAPQ9NPH3 570 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 KRCC1Q9NPI7 259 aaPredicted RBP16.12■□□□□ 0.17
CLN3-259ENST00000637551 UPB1Q9UBR1 384 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 PRSS50Q9UI38 385 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 TMEM5Q9Y2B1 443 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 MAGED1Q9Y5V3 778 aaPredicted RBP16.12■□□□□ 0.17
CLN3-259ENST00000637551 NAV3Q8IVL0 2385 aa16.12■□□□□ 0.17
CLN3-259ENST00000637551 HRNRQ86YZ3 2850 aaPredicted RBP16.11■□□□□ 0.17
CLN3-259ENST00000637551 OR5H1A6NKK0 313 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 ZNF587BE7ETH6 402 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 OR7A10O76100 309 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 OR6A2O95222 327 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 STAMBPO95630 424 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 CH25HO95992 272 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 HRGP04196 525 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 TCN1P20061 433 aaPredicted RBP16.11■□□□□ 0.17
CLN3-259ENST00000637551 UGT2B15P54855 530 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 RPS4XP62701 263 aaKnown RBP16.11■□□□□ 0.17
CLN3-259ENST00000637551 NANOGNBQ7Z5D8 188 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 TMEM123Q8N131 208 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 UBE2J2Q8N2K1 259 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 C10orf53Q8N6V4 93 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 MAGEE2Q8TD90 523 aaPredicted RBP16.11■□□□□ 0.17
CLN3-259ENST00000637551 S100PBPQ96BU1 408 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 DNAJA3Q96EY1 480 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 POM121Q96HA1 1249 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 PIP5K1AQ99755 562 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 CLEC4MQ9H2X3 399 aaPredicted RBP16.11■□□□□ 0.17
CLN3-259ENST00000637551 SLC7A10Q9NS82 523 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 AKAP6Q13023 2319 aa16.11■□□□□ 0.17
CLN3-259ENST00000637551 DEFB108AA8MXU0 73 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 ENTPD5O75356 428 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 UBOX5O94941 541 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 H1F0P07305 194 aaKnown RBP16.1■□□□□ 0.17
CLN3-259ENST00000637551 ADORA3P0DMS8 318 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 NR2C1P13056 603 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 MAGEA2P43356 314 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 PRKCDQ05655 676 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 IQCCQ4KMZ1 466 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 TSPO2Q5TGU0 170 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 RINLQ6ZS11 566 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 MBOAT2Q6ZWT7 520 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 ZNF627Q7L945 461 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 TMEM200AQ86VY9 491 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 DHFR2Q86XF0 187 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 P3H2Q8IVL5 708 aa16.1■□□□□ 0.17
CLN3-259ENST00000637551 CCDC36Q8IYA8 594 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms