RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PCGF3Q3KNV8 242 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 FAM153CQ494X1 144 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 RFTN2Q52LD8 501 aaPredicted RBP12.31□□□□□ -0.44
CLN3-249ENST00000636685 KPRPQ5T749 579 aaPredicted RBP12.31□□□□□ -0.44
CLN3-249ENST00000636685 PRAMEF8Q5VWM4 474 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 PRAMEF7Q5VXH5 474 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 LIPMQ5VYY2 423 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 TYW3Q6IPR3 259 aaKnown RBP12.31□□□□□ -0.44
CLN3-249ENST00000636685 FIP1L1Q6UN15 594 aaKnown RBP12.31□□□□□ -0.44
CLN3-249ENST00000636685 C16orf62Q7Z3J2 963 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 R3HCC1LQ7Z5L2 792 aaKnown RBP12.31□□□□□ -0.44
CLN3-249ENST00000636685 SLC22A9Q8IVM8 553 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 CCDC36Q8IYA8 594 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 KDM8Q8N371 416 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 BHLHE22Q8NFJ8 381 aaPredicted RBP12.31□□□□□ -0.44
CLN3-249ENST00000636685 MRAPQ8TCY5 172 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 GTF3AQ92664 365 aaKnown RBP12.31□□□□□ -0.44
CLN3-249ENST00000636685 EXOSC3Q9NQT5 275 aaKnown RBP12.31□□□□□ -0.44
CLN3-249ENST00000636685 DNAH9Q9NYC9 4486 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 DSPPQ9NZW4 1301 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 NOTCH3Q9UM47 2321 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 TPD52L2O43399 206 aaKnown RBP12.3□□□□□ -0.44
CLN3-249ENST00000636685 NDUFA7O95182 113 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 VAMP5O95183 116 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 GSTA1P08263 222 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 HPCAL1P37235 193 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 PAFAH1B1P43034 410 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 SERPINB9P50453 376 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 KCNJ10P78508 379 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 CAV1Q03135 178 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 TSTQ16762 297 aaKnown RBP12.3□□□□□ -0.44
CLN3-249ENST00000636685 HFEQ30201 348 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 AP1ARQ63HQ0 302 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 CLEC6AQ6EIG7 209 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 CLEC4FQ8N1N0 589 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 GPR137CQ8N3F9 429 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 ANKK1Q8NFD2 765 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 MGARPQ8TDB4 240 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 MOAP1Q96BY2 351 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 PAFAH2Q99487 392 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 MRI1Q9BV20 369 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 GATA5Q9BWX5 397 aaPredicted RBP12.3□□□□□ -0.44
CLN3-249ENST00000636685 NKIRAS2Q9NYR9 191 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 NINJ2Q9NZG7 142 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 SEC14L4Q9UDX3 406 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 INSIG2Q9Y5U4 225 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 TANC2Q9HCD6 1990 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 DOCK11Q5JSL3 2073 aa12.3□□□□□ -0.44
CLN3-249ENST00000636685 DUXAA6NLW8 204 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 ZNF99A8MXY4 864 aaPredicted RBP12.29□□□□□ -0.44
CLN3-249ENST00000636685 SLC28A1O00337 649 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 SLC43A1O75387 559 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 IGHMP01871 453 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 MAKP20794 623 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 CASQ1P31415 396 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 PHBP35232 272 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 SOAT1P35610 550 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 PTDSS1P48651 473 aaKnown RBP12.29□□□□□ -0.44
CLN3-249ENST00000636685 BNIP2Q12982 314 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 HNRNPA0Q13151 305 aaKnown RBP12.29□□□□□ -0.44
CLN3-249ENST00000636685 RGS7BPQ6MZT1 257 aaPredicted RBP12.29□□□□□ -0.44
CLN3-249ENST00000636685 C9orf139Q6ZV77 190 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 C6orf120Q7Z4R8 191 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 CMIPQ8IY22 773 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 PARP8Q8N3A8 854 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 OR52E2Q8NGJ4 325 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 SNX33Q8WV41 574 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 CCL17Q92583 94 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 TAPBPLQ9BX59 468 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 TCF7L1Q9HCS4 588 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 DECR2Q9NUI1 292 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 RASD1Q9Y272 281 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 WDR45Q9Y484 360 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 RNF114Q9Y508 228 aa12.29□□□□□ -0.44
CLN3-249ENST00000636685 CFLARO15519 480 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 UROSP10746 265 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 GIPRP48546 466 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 MAP2K6P52564 334 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 LSM12Q3MHD2 195 aaKnown RBP12.28□□□□□ -0.44
CLN3-249ENST00000636685 GALNTL6Q49A17 601 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 PHYHD1Q5SRE7 291 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 SAMD5Q5TGI4 173 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 FRRS1Q6ZNA5 592 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 REC114Q7Z4M0 266 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 SLC35G5Q96KT7 338 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 MARCH7Q9H992 704 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 SAP30LQ9HAJ7 183 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.28□□□□□ -0.44
CLN3-249ENST00000636685 SLC7A8Q9UHI5 535 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 GPR160Q9UJ42 338 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 RCE1Q9Y256 329 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 SAR1BQ9Y6B6 198 aa12.28□□□□□ -0.44
CLN3-249ENST00000636685 TET2Q6N021 2002 aaPredicted RBP12.28□□□□□ -0.44
CLN3-249ENST00000636685 COL7A1Q02388 2944 aa12.27□□□□□ -0.44
CLN3-249ENST00000636685 RYR2Q92736 4967 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 SRRM5B3KS81 715 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 POC1B-GALNT4F8VUJ3 575 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 FRS3O43559 492 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 FAM157BP0CG42 384 aa12.27□□□□□ -0.45
CLN3-249ENST00000636685 OR12D1P0DN82 309 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms