RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 CENPBD1B2RD01 187 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 J3QRE1 110 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 AKAP8O43823 692 aaKnown RBP9.52□□□□□ -0.89
CLN3-248ENST00000636355 NME2P1O60361 137 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 INMTO95050 263 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 SLC2A10O95528 541 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 RENP00797 406 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 PTHP01270 115 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 SCG5P05408 212 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 TFPIP10646 304 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 NME2P22392 152 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 MLLT10P55197 1068 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 ACTA2P62736 377 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 RAC1P63000 192 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 ACTG2P63267 376 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 CSNK2A1P68400 391 aaPredicted RBP9.52□□□□□ -0.89
CLN3-248ENST00000636355 SLC35A1P78382 337 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 TLE3Q04726 772 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 MYBPHQ13203 477 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 SPHARQ15513 63 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 OR1C1Q15619 314 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 HYAL4Q2M3T9 481 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 CNPY1Q3B7I2 92 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 SLC35F1Q5T1Q4 408 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 RAET1LQ5VY80 246 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 PAQR6Q6TCH4 344 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 AMER2Q8N7J2 671 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 NANOGP1Q8N7R0 232 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 MDS2Q8NDY4 140 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 SDR9C7Q8NEX9 313 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 BBS1Q8NFJ9 593 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 OR52E2Q8NGJ4 325 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 FNDC8Q8TC99 324 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 TMIGD2Q96BF3 282 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 YIPF6Q96EC8 236 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 TSPAN32Q96QS1 320 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 CNN2Q99439 309 aaKnown RBP9.52□□□□□ -0.89
CLN3-248ENST00000636355 DDOQ99489 341 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 FUNDC2Q9BWH2 189 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 OR11A1Q9GZK7 315 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 ZNF703Q9H7S9 590 aaPredicted RBP9.52□□□□□ -0.89
CLN3-248ENST00000636355 KLHL1Q9NR64 748 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 TAS2R5Q9NYW4 299 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 VSX1Q9NZR4 365 aaPredicted RBP9.52□□□□□ -0.89
CLN3-248ENST00000636355 RPH3AQ9Y2J0 694 aaPredicted RBP9.52□□□□□ -0.89
CLN3-248ENST00000636355 CAB39Q9Y376 341 aaPredicted RBP9.52□□□□□ -0.89
CLN3-248ENST00000636355 FKBP7Q9Y680 259 aa9.52□□□□□ -0.89
CLN3-248ENST00000636355 OR2M5A3KFT3 312 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 FAM183AA6NL82 134 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 AQP7P3A6NL99 342 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 H3BMQ9 156 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 RNF13O43567 381 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 GLCEO94923 617 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 VAMP5O95183 116 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 LCKP06239 509 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 SBK2P0C263 348 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 SPI1P17947 270 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 CCNA2P20248 432 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 GSTT1P30711 240 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 ATP6V1E1P36543 226 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 TGFBR2P37173 567 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 CD96P40200 585 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 MAP2K4P45985 399 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 DIO1P49895 249 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 TAS2R43P59537 309 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 RPS7P62081 194 aaKnown RBP9.51□□□□□ -0.89
CLN3-248ENST00000636355 ERVK-25P63136 954 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 FOXO1Q12778 655 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 CLN3Q13286 438 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 PON3Q15166 354 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 POU4F3Q15319 338 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 OR7A5Q15622 319 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 RSPO4Q2I0M5 234 aaPredicted RBP9.51□□□□□ -0.89
CLN3-248ENST00000636355 MESTQ5EB52 335 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 GPR107Q5VW38 600 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 DNM1P34Q6PK57 102 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 C19orf48Q6RUI8 117 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 IGFL2Q6UWQ7 119 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 TMPRSS11AQ6ZMR5 421 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 GDPGP1Q6ZNW5 385 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 SLC16A12Q6ZSM3 486 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 BCDIN3DQ7Z5W3 292 aaKnown RBP9.51□□□□□ -0.89
CLN3-248ENST00000636355 ERI1Q8IV48 349 aaKnown RBP9.51□□□□□ -0.89
CLN3-248ENST00000636355 KLHL36Q8N4N3 616 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 TMEM178AQ8NBL3 297 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 OR2M7Q8NG81 312 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 OR9Q1Q8NGQ5 310 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 OR4K13Q8NH42 304 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 SNIP1Q8TAD8 396 aaKnown RBP9.51□□□□□ -0.89
CLN3-248ENST00000636355 HAS2Q92819 552 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 PTP4A1Q93096 173 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 SLC25A36Q96CQ1 311 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 RASD2Q96D21 266 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 ZHX1-C8orf76Q96EF9 292 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 ARL5BQ96KC2 179 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 Q96M85 177 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 C5orf34Q96MH7 638 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 TEAD3Q99594 435 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 MGLLQ99685 303 aa9.51□□□□□ -0.89
CLN3-248ENST00000636355 MFRPQ9BY79 579 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms