RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 RAB1BQ9H0U4 201 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 PRDM4Q9UKN5 801 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 IGKV1D-42A0A075B6H8 117 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 IGHV2OR16-5A0A0B4J2B6 119 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 A0A1B0GWA3 101 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 SLCO1B7G3V0H7 640 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 LYNX1G3V0Z9 82 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 RPL36A-HNRNPH2H7BZ11 118 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 M0R3G1 203 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 PDE5AO76074 875 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 IGFBP1P08833 259 aaPredicted RBP13.98□□□□□ -0.17
CLN3-246ENST00000636228 LYNX1P0DP58 116 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 HLA-DOBP13765 273 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 DAOP14920 347 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 NPR2P20594 1047 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 HTR2AP28223 471 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 PPOXP50336 477 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 GLIPR1L2Q4G1C9 344 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 KRT80Q6KB66 452 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 CDK20Q8IZL9 346 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 C10orf111Q8N326 155 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 MIER2Q8N344 545 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 NUP37Q8NFH4 326 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 NFKBIDQ8NI38 313 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 RNF217Q8TC41 542 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 OR2M2Q96R28 347 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 EMC6Q9BV81 110 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 BCL2L10Q9HD36 194 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 A4GALTQ9NPC4 353 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 THUMPD1Q9NXG2 353 aaKnown RBP13.98□□□□□ -0.17
CLN3-246ENST00000636228 RCE1Q9Y256 329 aa13.98□□□□□ -0.17
CLN3-246ENST00000636228 C5orf58C9J3I9 102 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 AIM2O14862 343 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 TPST1O60507 370 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 HPRP00739 348 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 HOXB1P14653 301 aaPredicted RBP13.97□□□□□ -0.17
CLN3-246ENST00000636228 AQP5P55064 265 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 SH3BGRP55822 239 aaPredicted RBP13.97□□□□□ -0.17
CLN3-246ENST00000636228 CR1LQ2VPA4 569 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 C3orf36Q3SXR2 165 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 MSANTD1Q6ZTZ1 278 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 H1FNTQ75WM6 255 aaPredicted RBP13.97□□□□□ -0.17
CLN3-246ENST00000636228 WDFY1Q8IWB7 410 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 MSRB3Q8IXL7 192 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 FAM169BQ8N8A8 192 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 BBS10Q8TAM1 723 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 TXNDC15Q96J42 360 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 ZNF317Q96PQ6 595 aaPredicted RBP13.97□□□□□ -0.17
CLN3-246ENST00000636228 TPK1Q9H3S4 243 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 NOX3Q9HBY0 568 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 MYOZ1Q9NP98 299 aaPredicted RBP13.97□□□□□ -0.17
CLN3-246ENST00000636228 SLC25A37Q9NYZ2 338 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 SLAMF8Q9P0V8 285 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 RAB21Q9UL25 225 aa13.97□□□□□ -0.17
CLN3-246ENST00000636228 YLPM1P49750 1951 aaKnown RBP13.96□□□□□ -0.17
CLN3-246ENST00000636228 MS4A18H0YCH9 400 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 TRAF3IP2O43734 574 aaPredicted RBP13.96□□□□□ -0.17
CLN3-246ENST00000636228 OR2T1O43869 369 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 LILRA1O75019 489 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 HLA-HP01893 362 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 ADRA2AP08913 450 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 HOXB9P17482 250 aaPredicted RBP13.96□□□□□ -0.17
CLN3-246ENST00000636228 PAX7P23759 505 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 ARR3P36575 388 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 MAGOHP61326 146 aaKnown RBP13.96□□□□□ -0.17
CLN3-246ENST00000636228 PIGFQ07326 219 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 DAG1Q14118 895 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 TRIP10Q15642 601 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 ADRM1Q16186 407 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 MSMPQ1L6U9 139 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 MS4A18Q3C1V0 323 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 ALG10BQ5I7T1 473 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 FAM69AQ5T7M9 428 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 TMEM123Q8N131 208 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 ZNF540Q8NDQ6 660 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 PIK3C3Q8NEB9 887 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 CKAP2Q8WWK9 683 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 SLC38A4Q969I6 547 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 MS4A3Q96HJ5 214 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 SNX18Q96RF0 628 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 WFDC6Q9BQY6 131 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 ZNF442Q9H7R0 627 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 DYNLRB1Q9NP97 96 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 KLHL14Q9P2G3 628 aa13.96□□□□□ -0.17
CLN3-246ENST00000636228 HEATR1Q9H583 2144 aaKnown RBP13.96□□□□□ -0.18
CLN3-246ENST00000636228 TRAV36DV7A0A075B6V5 113 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 VSTM5A8MXK1 200 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 LRRN3E7EW58 273 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 CD79AP11912 226 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 BMP2P12643 396 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 HNF1AP20823 631 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 APEX1P27695 318 aaKnown RBP13.95□□□□□ -0.18
CLN3-246ENST00000636228 THBS2P35442 1172 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 SNTB2Q13425 540 aaKnown RBP13.95□□□□□ -0.18
CLN3-246ENST00000636228 C6orf89Q6UWU4 347 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 UEVLDQ8IX04 471 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 C20orf196Q8IYI0 205 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 ANKK1Q8NFD2 765 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 C1orf159Q96HA4 380 aa13.95□□□□□ -0.18
CLN3-246ENST00000636228 ANKRD27Q96NW4 1050 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms