RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 POU2F1P14859 743 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 UQCRBP14927 111 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 IDH2P48735 452 aaKnown RBP11.27□□□□□ -0.61
PNKP-217ENST00000625216 ART1P52961 327 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 CTBP2P56545 445 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 ADARB1P78563 741 aaKnown RBP11.27□□□□□ -0.61
PNKP-217ENST00000625216 CBFBQ13951 182 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 ZNF730Q6ZMV8 503 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 MEX3DQ86XN8 651 aaKnown RBP11.27□□□□□ -0.61
PNKP-217ENST00000625216 ZNF610Q8N9Z0 462 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 PFN4Q8NHR9 129 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 GTPBP3Q969Y2 492 aaKnown RBP11.27□□□□□ -0.61
PNKP-217ENST00000625216 CPNE4Q96A23 557 aaPredicted RBP11.27□□□□□ -0.61
PNKP-217ENST00000625216 RDH12Q96NR8 316 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 NPAS1Q99742 590 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 ZNF426Q9BUY5 554 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 OPN3Q9H1Y3 402 aaPredicted RBP11.27□□□□□ -0.61
PNKP-217ENST00000625216 GP6Q9HCN6 339 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 KRT84Q9NSB2 600 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 ZNF226Q9NYT6 803 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 RPS6KB2Q9UBS0 482 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 RAB26Q9ULW5 256 aa11.27□□□□□ -0.61
PNKP-217ENST00000625216 TNFSF11O14788 317 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 GASTP01350 101 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 OPN1LWP04000 364 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 HRGP04196 525 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 PRKCAP17252 672 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 PGCP20142 388 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 UGT2B10P36537 528 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 POLR2IP36954 125 aaKnown RBP11.26□□□□□ -0.61
PNKP-217ENST00000625216 CAPGP40121 348 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 OMPP47874 163 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 RAD23AP54725 363 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 IL1RL1Q01638 556 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 MERTKQ12866 999 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 FOXF1Q12946 379 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 QPRTQ15274 297 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 RFX4Q33E94 735 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 ALG10BQ5I7T1 473 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 WBP2NLQ6ICG8 309 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 KLHL17Q6TDP4 642 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 LINC00114Q6XXX2 140 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 MBOAT2Q6ZWT7 520 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 ZER1Q7Z7L7 766 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 ATG4DQ86TL0 474 aaPredicted RBP11.26□□□□□ -0.61
PNKP-217ENST00000625216 ZNF563Q8TA94 476 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 RNF217Q8TC41 542 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 TMEM239Q8WW34 195 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 TMEM234Q8WY98 164 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 NRGNQ92686 78 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 TFAP2CQ92754 450 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 MBD6Q96DN6 1003 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 ZNF570Q96NI8 536 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 GPA33Q99795 319 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 DGCR6LQ9BY27 220 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 GABARAPL3Q9BY60 117 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 CXXC4Q9H2H0 198 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 RIBC2Q9H4K1 309 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 TMEM185BQ9H7F4 350 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 PAPOLBQ9NRJ5 636 aaKnown RBP11.26□□□□□ -0.61
PNKP-217ENST00000625216 MGAT4BQ9UQ53 548 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 POFUT2Q9Y2G5 429 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 F8P00451 2351 aa11.26□□□□□ -0.61
PNKP-217ENST00000625216 HIVEP1P15822 2718 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 IGKV1D-42A0A075B6H8 117 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 E9PQ18 207 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 KLF4O43474 513 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 EFNA2O43921 213 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 PPP3CBP16298 524 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 SFTPDP35247 375 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 GPR4P46093 362 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 GSSP48637 474 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 COPZ1P61923 177 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 SELENBP1Q13228 472 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 RNPS1Q15287 305 aaKnown RBP11.25□□□□□ -0.61
PNKP-217ENST00000625216 TMEM176BQ3YBM2 270 aaPredicted RBP11.25□□□□□ -0.61
PNKP-217ENST00000625216 SLC36A3Q495N2 470 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 SWT1Q5T5J6 900 aaKnown RBP11.25□□□□□ -0.61
PNKP-217ENST00000625216 C1orf94Q6P1W5 598 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 ULK3Q6PHR2 472 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 PAMR1Q6UXH9 720 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 BEND4Q6ZU67 534 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 NRMQ8IXM6 262 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 SLC43A2Q8N370 569 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 LINC00471Q8N535 108 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 DHRSXQ8N5I4 330 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 PIGXQ8TBF5 258 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 DNAJA4Q8WW22 397 aaPredicted RBP11.25□□□□□ -0.61
PNKP-217ENST00000625216 CYGBQ8WWM9 190 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 ST8SIA1Q92185 356 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 FAM46AQ96IP4 442 aaKnown RBP11.25□□□□□ -0.61
PNKP-217ENST00000625216 MPP4Q96JB8 637 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 WFIKKN1Q96NZ8 548 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 MED18Q9BUE0 208 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 LIME1Q9H400 295 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 PLEKHF2Q9H8W4 249 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 SERINC1Q9NRX5 453 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 REV1Q9UBZ9 1251 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 LRCH1Q9Y2L9 728 aa11.25□□□□□ -0.61
PNKP-217ENST00000625216 ORC6Q9Y5N6 252 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms