RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CDNFQ49AH0 187 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 TP53I3Q53FA7 332 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 VWA2Q5GFL6 755 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 HSD11B1LQ7Z5J1 315 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 CDK20Q8IZL9 346 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 SLC39A7Q92504 469 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 GLYATL1Q969I3 302 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 SLC25A28Q96A46 364 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 ZNF285Q96NJ3 590 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 RIOK2Q9BVS4 552 aaKnown RBP9.93□□□□□ -0.82
UPF3A-212ENST00000619079 DPH1Q9BZG8 443 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 BCL2L14Q9BZR8 327 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 EPHX3Q9H6B9 360 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 SEBOXQ9HB31 216 aaPredicted RBP9.93□□□□□ -0.82
UPF3A-212ENST00000619079 OR5V1Q9UGF6 321 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 NUP210Q8TEM1 1887 aaPredicted RBP9.92□□□□□ -0.82
UPF3A-212ENST00000619079 NDUFS4O43181 175 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 FGF16O43320 207 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 TMPRSS11DO60235 418 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 IFNGP01579 166 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 THY1P04216 161 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 PTAFRP25105 342 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 VASPP50552 380 aaPredicted RBP9.92□□□□□ -0.82
UPF3A-212ENST00000619079 UBE2MP61081 183 aaKnown RBP9.92□□□□□ -0.82
UPF3A-212ENST00000619079 TMEM115Q12893 351 aaPredicted RBP9.92□□□□□ -0.82
UPF3A-212ENST00000619079 LMAN2Q12907 356 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 NKAPLQ5M9Q1 402 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 C2orf16Q68DN1 1984 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 C11orf87Q6NUJ2 197 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 TMEM220Q6QAJ8 160 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 Q6ZVL8 140 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 RANBP3LQ86VV4 465 aaPredicted RBP9.92□□□□□ -0.82
UPF3A-212ENST00000619079 C17orf64Q86WR6 236 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 ZFP82Q8N141 532 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 SNX33Q8WV41 574 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 SMARCD2Q92925 531 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 ASB16Q96NS5 453 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 TINAGL1Q9GZM7 467 aaPredicted RBP9.92□□□□□ -0.82
UPF3A-212ENST00000619079 TCF7L1Q9HCS4 588 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 PRDM9Q9NQV7 894 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 MIOXQ9UGB7 285 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 HS3ST2Q9Y278 367 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 MCIDASD6RGH6 385 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 TBX6O95947 436 aaPredicted RBP9.92□□□□□ -0.82
UPF3A-212ENST00000619079 IGHV2-70P01814 119 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 CSF2RBP32927 897 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 DLSTP36957 453 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 VIPR2P41587 438 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 FXYD6P3P58550 94 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 ST8SIA6P61647 398 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 EIPR1Q53HC9 387 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 FAM78AQ5JUQ0 283 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 IL34Q6ZMJ4 242 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 SSX6Q7RTT6 188 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 SLC43A2Q8N370 569 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 GTPBP8Q8N3Z3 284 aaPredicted RBP9.92□□□□□ -0.82
UPF3A-212ENST00000619079 OR5M8Q8NGP6 311 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 DUSP19Q8WTR2 217 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 TMEM41AQ96HV5 264 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 ZNF75AQ96N20 296 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 LRFN5Q96NI6 719 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 GFI1Q99684 422 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 TLNRD1Q9H1K6 362 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 POT1Q9NUX5 634 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 ANKRD10Q9NXR5 420 aa9.92□□□□□ -0.82
UPF3A-212ENST00000619079 C17orf113A0A1B0GUU1 675 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 GXYLT2A0PJZ3 443 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 GGT3PA6NGU5 568 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 OR2AT4A6NND4 320 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 XRCC3O43542 346 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 FBP1P09467 338 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 PRF1P14222 555 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 EIF2S3LQ2VIR3 472 aaKnown RBP9.91□□□□□ -0.82
UPF3A-212ENST00000619079 LRRC73Q5JTD7 316 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 LY6G6FQ5SQ64 297 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 Q6ZNB5 142 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 MTSS1LQ765P7 747 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 NDUFAF7Q7L592 441 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 JAZF1Q86VZ6 243 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 MISPQ8IVT2 679 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 C15orf54Q8N8G6 183 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 FIBINQ8TAL6 211 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 SGK3Q96BR1 496 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 PEX11GQ96HA9 241 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 OR7D2Q96RA2 312 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 CNN2Q99439 309 aaKnown RBP9.91□□□□□ -0.82
UPF3A-212ENST00000619079 KXD1Q9BQD3 176 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 ADAT1Q9BUB4 502 aaKnown RBP9.91□□□□□ -0.82
UPF3A-212ENST00000619079 WDR13Q9H1Z4 485 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 MYOZ1Q9NP98 299 aaPredicted RBP9.91□□□□□ -0.82
UPF3A-212ENST00000619079 MMP26Q9NRE1 261 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 SMCO4Q9NRQ5 59 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 ZNF223Q9UK11 482 aaPredicted RBP9.91□□□□□ -0.82
UPF3A-212ENST00000619079 CCL26Q9Y258 94 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 ANAPC1Q9H1A4 1944 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 A0A1B0GTI1 187 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 F5H0A9 414 aaPredicted RBP9.91□□□□□ -0.82
UPF3A-212ENST00000619079 EMC8O43402 210 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 AKR7A3O95154 331 aa9.91□□□□□ -0.82
UPF3A-212ENST00000619079 NPBWR1P48145 328 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms