RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CXCL10P02778 98 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 AKAIN1P0CW23 69 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 SULT1A3P0DMM9 295 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 SULT1A4P0DMN0 295 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 RRASP10301 218 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 HOXB2P14652 356 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 POU3F2P20265 443 aaPredicted RBP11.57□□□□□ -0.56
LIG1-221ENST00000613670 CD34P28906 385 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 PRKXP51817 358 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 GUCA2AQ02747 115 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 Q499Y3 187 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 TMEM205Q6UW68 189 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 WDR88Q6ZMY6 472 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 OVCH1Q7RTY7 1134 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 PRSS41Q7RTY9 318 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 TMEM17Q86X19 198 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 C12orf45Q8N5I9 185 aaPredicted RBP11.57□□□□□ -0.56
LIG1-221ENST00000613670 PATE1Q8WXA2 126 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 MMABQ96EY8 250 aaPredicted RBP11.57□□□□□ -0.56
LIG1-221ENST00000613670 RADILQ96JH8 1075 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 OR1F2PQ96R84 312 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 TIMM29Q9BSF4 260 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 PRTFDC1Q9NRG1 225 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 TAS2R8Q9NYW2 309 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 NLRC5Q86WI3 1866 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 C4orf51C9J302 202 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 C5AR1P21730 350 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 TPMTP51580 245 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 ZNF584Q8IVC4 421 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 ZNF101Q8IZC7 436 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 TTC9Q92623 222 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 FAM46BQ96A09 425 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 GPER1Q99527 375 aa11.57□□□□□ -0.56
LIG1-221ENST00000613670 TRAF4Q9BUZ4 470 aaPredicted RBP11.57□□□□□ -0.56
LIG1-221ENST00000613670 C19orf53Q9UNZ5 99 aaPredicted RBP11.57□□□□□ -0.56
LIG1-221ENST00000613670 IGKV1-8A0A0C4DH67 115 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 ZNF705EA8MWA4 302 aaPredicted RBP11.56□□□□□ -0.56
LIG1-221ENST00000613670 AIPO00170 330 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 BHLHE40O14503 412 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 TOR1AO14656 332 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 ADH1BP00325 375 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 DCNP07585 359 aaKnown RBP11.56□□□□□ -0.56
LIG1-221ENST00000613670 GIPP09681 153 aaPredicted RBP11.56□□□□□ -0.56
LIG1-221ENST00000613670 SPI1P17947 270 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 EMDP50402 254 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 P2RX1P51575 399 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 PLPP7Q8NBV4 271 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 CASP8AP2Q9UKL3 1982 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 POM121BA6NF01 834 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 SIGLEC5O15389 551 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 ZFPL1O95159 310 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 THBS1P07996 1170 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 UBL4AP11441 157 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 LIMK1P53667 647 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 MAT1AQ00266 395 aaKnown RBP11.56□□□□□ -0.56
LIG1-221ENST00000613670 SIGLEC14Q08ET2 396 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 SLC36A2Q495M3 483 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 GLT8D1Q68CQ7 371 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 OR7E24Q6IFN5 339 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 WDR92Q96MX6 357 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 LRRC3BQ96PB8 259 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 ZNF350Q9GZX5 532 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 GSKIPQ9P0R6 139 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 RABL2AQ9UBK7 228 aaPredicted RBP11.56□□□□□ -0.56
LIG1-221ENST00000613670 A0A1B0GUH1 482 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 PRSS38A1L453 326 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 SOX1O00570 391 aaPredicted RBP11.56□□□□□ -0.56
LIG1-221ENST00000613670 S100A9P06702 114 aaKnown RBP11.56□□□□□ -0.56
LIG1-221ENST00000613670 S100A6P06703 90 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 CSF1P09603 554 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 MRPS10P82664 201 aaKnown RBP11.56□□□□□ -0.56
LIG1-221ENST00000613670 DMKNQ6E0U4 476 aaPredicted RBP11.56□□□□□ -0.56
LIG1-221ENST00000613670 MAMSTRQ6ZN01 415 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 OR10H5Q8NGA6 315 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 ZNF417Q8TAU3 575 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 SCARB1Q8WTV0 552 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 SYT4Q9H2B2 425 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 MTIF3Q9H2K0 278 aaKnown RBP11.56□□□□□ -0.56
LIG1-221ENST00000613670 CA10Q9NS85 328 aa11.56□□□□□ -0.56
LIG1-221ENST00000613670 MRTO4Q9UKD2 239 aaKnown RBP11.56□□□□□ -0.56
LIG1-221ENST00000613670 C2orf74A8MZ97 194 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 IMPA2O14732 288 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 SHOXO15266 292 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 PRAMEF2O60811 474 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 DNAJB6O75190 326 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 HNRNPA1P09651 372 aaKnown RBP eCLIP11.55□□□□□ -0.56
LIG1-221ENST00000613670 CD53P19397 219 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 GJA4P35212 333 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 POU3F4P49335 361 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 LUMP51884 338 aaPredicted RBP11.55□□□□□ -0.56
LIG1-221ENST00000613670 SPOCK1Q08629 439 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 TUSC1Q2TAM9 212 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 RNASE10Q5GAN6 216 aaKnown RBP11.55□□□□□ -0.56
LIG1-221ENST00000613670 TMEM81Q6P7N7 255 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 TMEM65Q6PI78 240 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 KIRREL2Q6UWL6 708 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 STEAP2Q8NFT2 490 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 MNTQ99583 582 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 PTDSS2Q9BVG9 487 aa11.55□□□□□ -0.56
LIG1-221ENST00000613670 TBL1XR1Q9BZK7 514 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms