RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 CEACAM16Q2WEN9 425 aa11.41□□□□□ -0.58
RPS28-204ENST00000602140 FAM120AOSQ5T036 256 aa11.41□□□□□ -0.58
RPS28-204ENST00000602140 FAM69AQ5T7M9 428 aa11.41□□□□□ -0.58
RPS28-204ENST00000602140 C6orf89Q6UWU4 347 aa11.41□□□□□ -0.58
RPS28-204ENST00000602140 ZNF540Q8NDQ6 660 aa11.41□□□□□ -0.58
RPS28-204ENST00000602140 ANKK1Q8NFD2 765 aa11.41□□□□□ -0.58
RPS28-204ENST00000602140 NUP37Q8NFH4 326 aa11.41□□□□□ -0.58
RPS28-204ENST00000602140 ZNF417Q8TAU3 575 aa11.41□□□□□ -0.58
RPS28-204ENST00000602140 ZNF837Q96EG3 531 aaPredicted RBP11.41□□□□□ -0.58
RPS28-204ENST00000602140 ZNF587Q96SQ5 575 aaPredicted RBP11.41□□□□□ -0.58
RPS28-204ENST00000602140 RSPO3Q9BXY4 272 aaPredicted RBP11.41□□□□□ -0.58
RPS28-204ENST00000602140 BPESC1Q9GZL8 116 aa11.41□□□□□ -0.58
RPS28-204ENST00000602140 RAB1BQ9H0U4 201 aa11.41□□□□□ -0.58
RPS28-204ENST00000602140 C12orf10Q9HB07 376 aa11.41□□□□□ -0.58
RPS28-204ENST00000602140 CRLF2Q9HC73 371 aa11.41□□□□□ -0.58
RPS28-204ENST00000602140 GPR35Q9HC97 309 aa11.41□□□□□ -0.58
RPS28-204ENST00000602140 NKIRAS1Q9NYS0 192 aa11.41□□□□□ -0.58
RPS28-204ENST00000602140 IGHV2OR16-5A0A0B4J2B6 119 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 A0A1B0GWA3 101 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 SH3PXD2BA1X283 911 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 ZNF503-AS2A6NEH8 195 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 VSTM5A8MXK1 200 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 hCG_2039718K7EN88 272 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 OR2T1O43869 369 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 FZD7O75084 574 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 SEC14L2O76054 403 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 TGFAP01135 160 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 ETS2P15036 469 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 ZNF23P17027 643 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 HOXB9P17482 250 aaPredicted RBP11.4□□□□□ -0.58
RPS28-204ENST00000602140 NPR2P20594 1047 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 HTR2AP28223 471 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 GRPRP30550 384 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 PRKAR1BP31321 381 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 THBS2P35442 1172 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 CAPZA2P47755 286 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 SRSF2Q01130 221 aaKnown RBP11.4□□□□□ -0.58
RPS28-204ENST00000602140 NPRL3Q12980 569 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 C5orf46Q6UWT4 87 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 H1FNTQ75WM6 255 aaPredicted RBP11.4□□□□□ -0.58
RPS28-204ENST00000602140 SPATA21Q7Z572 469 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 COMTD1Q86VU5 262 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 ZCCHC24Q8N2G6 241 aaKnown RBP11.4□□□□□ -0.58
RPS28-204ENST00000602140 SVOPLQ8N434 492 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 GOLGA6L1Q8N7Z2 621 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 LSMEM1Q8N8F7 131 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 PIK3C3Q8NEB9 887 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 NFKBIDQ8NI38 313 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 SLC38A4Q969I6 547 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 OR2M2Q96R28 347 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 DOK1Q99704 481 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 ZNF442Q9H7R0 627 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 FBXO9Q9UK97 447 aaPredicted RBP11.4□□□□□ -0.58
RPS28-204ENST00000602140 USH1CQ9Y6N9 552 aa11.4□□□□□ -0.58
RPS28-204ENST00000602140 IGKV1D-42A0A075B6H8 117 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 TRAV36DV7A0A075B6V5 113 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 LOC102725191A0A1B0GVB3 256 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 TMEM129A0AVI4 362 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 LRP5LA4QPB2 252 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 M0R3G1 203 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 TRAF3IP2O43734 574 aaPredicted RBP11.39□□□□□ -0.59
RPS28-204ENST00000602140 AKAP8O43823 692 aaKnown RBP11.39□□□□□ -0.59
RPS28-204ENST00000602140 STAMBPO95630 424 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 DAOP14920 347 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 HNF1AP20823 631 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 ARR3P36575 388 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 ALG10BQ5I7T1 473 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 PHYHD1Q5SRE7 291 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 MALRD1Q5VYJ5 2156 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 CARD17Q5XLA6 110 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 EPGNQ6UW88 154 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 NET1Q7Z628 596 aaPredicted RBP11.39□□□□□ -0.59
RPS28-204ENST00000602140 MDP1Q86V88 176 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 TMEM123Q8N131 208 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 C10orf111Q8N326 155 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 RNF217Q8TC41 542 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 DNAJA4Q8WW22 397 aaPredicted RBP11.39□□□□□ -0.59
RPS28-204ENST00000602140 NEU4Q8WWR8 484 aaPredicted RBP11.39□□□□□ -0.59
RPS28-204ENST00000602140 ANKRD27Q96NW4 1050 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 SOX7Q9BT81 388 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 SLC25A37Q9NYZ2 338 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 SLAMF8Q9P0V8 285 aa11.39□□□□□ -0.59
RPS28-204ENST00000602140 ZNF99A8MXY4 864 aaPredicted RBP11.38□□□□□ -0.59
RPS28-204ENST00000602140 MS4A18H0YCH9 400 aa11.38□□□□□ -0.59
RPS28-204ENST00000602140 TPST1O60507 370 aa11.38□□□□□ -0.59
RPS28-204ENST00000602140 HPRP00739 348 aa11.38□□□□□ -0.59
RPS28-204ENST00000602140 ERCC1P07992 297 aaPredicted RBP11.38□□□□□ -0.59
RPS28-204ENST00000602140 ARAFP10398 606 aa11.38□□□□□ -0.59
RPS28-204ENST00000602140 HLA-DOBP13765 273 aa11.38□□□□□ -0.59
RPS28-204ENST00000602140 NQO1P15559 274 aaKnown RBP11.38□□□□□ -0.59
RPS28-204ENST00000602140 STX1BP61266 288 aa11.38□□□□□ -0.59
RPS28-204ENST00000602140 CDK6Q00534 326 aa11.38□□□□□ -0.59
RPS28-204ENST00000602140 DAG1Q14118 895 aa11.38□□□□□ -0.59
RPS28-204ENST00000602140 ADRM1Q16186 407 aa11.38□□□□□ -0.59
RPS28-204ENST00000602140 MS4A18Q3C1V0 323 aa11.38□□□□□ -0.59
RPS28-204ENST00000602140 GLIPR1L2Q4G1C9 344 aa11.38□□□□□ -0.59
RPS28-204ENST00000602140 LRIF1Q5T3J3 769 aa11.38□□□□□ -0.59
RPS28-204ENST00000602140 GCNT6Q5T4J0 391 aa11.38□□□□□ -0.59
RPS28-204ENST00000602140 KRT80Q6KB66 452 aa11.38□□□□□ -0.59
RPS28-204ENST00000602140 REEP3Q6NUK4 255 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms