RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 FAM215AQ9Y5M1 114 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 NOX1Q9Y5S8 564 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 MBD3L4A6NDZ8 208 aaPredicted RBP12.79□□□□□ -0.36
UPF1-211ENST00000600868 MBD3L3A6NE82 208 aaPredicted RBP12.79□□□□□ -0.36
UPF1-211ENST00000600868 MBD3L5A6NJ08 208 aaPredicted RBP12.79□□□□□ -0.36
UPF1-211ENST00000600868 NPIPB13A6NJU9 1138 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 KDM4EB2RXH2 506 aaPredicted RBP12.79□□□□□ -0.36
UPF1-211ENST00000600868 NPIPB4C9JG80 1138 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 C11orf98E9PRG8 122 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 H3BN98 237 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 SOX14O95416 240 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 SLC6A6P31641 620 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 CRISP1P54107 249 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 CASP6P55212 293 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 IL1RL1Q01638 556 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 SNCBQ16143 134 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 NHLRC1Q6VVB1 395 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 RPTNQ6XPR3 784 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 B3GNT6Q6ZMB0 384 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 DPY19L2P2Q6ZN68 376 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 P4HA3Q7Z4N8 544 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 GPAT4Q86UL3 456 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 UEVLDQ8IX04 471 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 KDM8Q8N371 416 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 GALNT11Q8NCW6 608 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 OR9K2Q8NGE7 335 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 OR52L1Q8NGH7 329 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 OR8D4Q8NGM9 314 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 MBD3L2Q8NHZ7 208 aaPredicted RBP12.79□□□□□ -0.36
UPF1-211ENST00000600868 TEX47Q8TBZ9 253 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 ABHD3Q8WU67 409 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 TM9SF2Q99805 663 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 PLA2G12AQ9BZM1 189 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 ENKD1Q9H0I2 346 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 BCO1Q9HAY6 547 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 GLRX2Q9NS18 164 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 KLHL13Q9P2N7 655 aa12.79□□□□□ -0.36
UPF1-211ENST00000600868 ING1Q9UK53 422 aaPredicted RBP12.79□□□□□ -0.36
UPF1-211ENST00000600868 A0A1W2PRG6 482 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 EIF4E1BA6NMX2 242 aaKnown RBP12.78□□□□□ -0.36
UPF1-211ENST00000600868 ZNF724A8MTY0 619 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 MCIDASD6RGH6 385 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 H0YJX3 145 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 DLGAP1O14490 977 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 TRAF3IP2O43734 574 aaPredicted RBP12.78□□□□□ -0.36
UPF1-211ENST00000600868 IGHMP01871 453 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 CD14P08571 375 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 IGFBP1P08833 259 aaPredicted RBP12.78□□□□□ -0.36
UPF1-211ENST00000600868 STSP08842 583 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 APEHP13798 732 aaKnown RBP12.78□□□□□ -0.36
UPF1-211ENST00000600868 ZNF43P17038 809 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 TIMP3P35625 211 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 RPL4P36578 427 aaKnown RBP12.78□□□□□ -0.36
UPF1-211ENST00000600868 CA7P43166 264 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 GIPRP48546 466 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 CTXN1P60606 82 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 NPRL3Q12980 569 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 C1DQ13901 141 aaKnown RBP12.78□□□□□ -0.36
UPF1-211ENST00000600868 OR2A2Q6IF42 318 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 PLXDC2Q6UX71 529 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 SEM1Q6ZVN7 128 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 CREB3L2Q70SY1 520 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 MCEMP1Q8IX19 187 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 GMPPAQ96IJ6 420 aaPredicted RBP12.78□□□□□ -0.36
UPF1-211ENST00000600868 ZFP3Q96NJ6 502 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 TACO1Q9BSH4 297 aaKnown RBP12.78□□□□□ -0.36
UPF1-211ENST00000600868 KATNB1Q9BVA0 655 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 TSSK6Q9BXA6 273 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 NRIP3Q9NQ35 241 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 TBC1D23Q9NUY8 699 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 SMPD3Q9NY59 655 aaPredicted RBP12.78□□□□□ -0.36
UPF1-211ENST00000600868 EMC3Q9P0I2 261 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 TINAGQ9UJW2 476 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 BAIAP2Q9UQB8 552 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 CFAP46Q8IYW2 2715 aa12.78□□□□□ -0.36
UPF1-211ENST00000600868 E9PLN8 166 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 BHLHE40O14503 412 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 GPR171O14626 319 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 ARPC3O15145 178 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 IDH3BO43837 385 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 SNAP29O95721 258 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 F13BP05160 661 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 YES1P07947 543 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 GLI4P10075 376 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 HLA-DOBP13765 273 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 POU1F1P28069 291 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 EPHA2P29317 976 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 VHLP40337 213 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 CDK5Q00535 292 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 POU3F1Q03052 451 aaPredicted RBP12.77□□□□□ -0.37
UPF1-211ENST00000600868 MRPL49Q13405 166 aaKnown RBP12.77□□□□□ -0.37
UPF1-211ENST00000600868 EIF2S3LQ2VIR3 472 aaKnown RBP12.77□□□□□ -0.37
UPF1-211ENST00000600868 CLEC12AQ5QGZ9 265 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 GPR139Q6DWJ6 353 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 FAM122BQ7Z309 247 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 IGFN1Q86VF2 1251 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 LNX2Q8N448 690 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 ZIC4Q8N9L1 334 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 C9orf106Q8NAJ2 232 aa12.77□□□□□ -0.37
UPF1-211ENST00000600868 OR2T33Q8NG76 320 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms