RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CLDN17P56750 224 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 TAS2R41P59536 307 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 PIN1Q13526 163 aaPredicted RBP14.17□□□□□ -0.14
TRIM28-213ENST00000598355 ADAM5Q6NVV9 412 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 NIPAL3Q6P499 406 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 ZNF704Q6ZNC4 412 aaPredicted RBP14.17□□□□□ -0.14
TRIM28-213ENST00000598355 ABHD12BQ7Z5M8 362 aaPredicted RBP14.17□□□□□ -0.14
TRIM28-213ENST00000598355 NKAIN4Q8IVV8 208 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 OFCC1Q8IZS5 231 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 LIPHQ8WWY8 451 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 GEMIN6Q8WXD5 167 aaKnown RBP14.17□□□□□ -0.14
TRIM28-213ENST00000598355 ALKBH3Q96Q83 286 aaPredicted RBP14.17□□□□□ -0.14
TRIM28-213ENST00000598355 OR2M2Q96R28 347 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 NGBQ9NPG2 151 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 MAN2C1Q9NTJ4 1040 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 CCM2LQ9NUG4 571 aaPredicted RBP14.17□□□□□ -0.14
TRIM28-213ENST00000598355 UPB1Q9UBR1 384 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 ZNF229Q9UJW7 825 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 NOX1Q9Y5S8 564 aa14.17□□□□□ -0.14
TRIM28-213ENST00000598355 AKAP8O43823 692 aaKnown RBP14.16□□□□□ -0.14
TRIM28-213ENST00000598355 UPK3AO75631 287 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 MT-ND1P03886 318 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 HLA-DOBP13765 273 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 DNASE1P24855 282 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 SLC25A3Q00325 362 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 TGFBR3Q03167 851 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 LGALS3BPQ08380 585 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 ZP4Q12836 540 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 KRT72Q14CN4 511 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 STK11Q15831 433 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 C20orf204Q6ZNR8 217 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 TSEN54Q7Z6J9 526 aaKnown RBP14.16□□□□□ -0.14
TRIM28-213ENST00000598355 PXKQ7Z7A4 578 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 FITM2Q8N6M3 262 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 WDR31Q8NA23 367 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 TMEM255BQ8WV15 326 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 TPD52L3Q96J77 140 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 NELFAQ9H3P2 528 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 SLC17A5Q9NRA2 495 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 CD300AQ9UGN4 299 aa14.16□□□□□ -0.14
TRIM28-213ENST00000598355 TEP1Q99973 2627 aaKnown RBP14.15□□□□□ -0.14
TRIM28-213ENST00000598355 CIB4A0PJX0 185 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 DPRXA6NFQ7 191 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 ZNF587BE7ETH6 402 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 FFAR1O14842 300 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 PLAUP00749 431 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 SERPINA1P01009 418 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 IFNW1P05000 195 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 NQO1P15559 274 aaKnown RBP14.15□□□□□ -0.14
TRIM28-213ENST00000598355 FUT4P22083 530 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 SH3BGRP55822 239 aaPredicted RBP14.15□□□□□ -0.14
TRIM28-213ENST00000598355 POU3F1Q03052 451 aaPredicted RBP14.15□□□□□ -0.14
TRIM28-213ENST00000598355 ST3GAL3Q11203 375 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 PMS2P3Q13401 168 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 ACKR1Q16570 336 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 SPATS1Q496A3 300 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 IFI44LQ53G44 452 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 GKAP1Q5VSY0 366 aaPredicted RBP14.15□□□□□ -0.14
TRIM28-213ENST00000598355 WDFY1Q8IWB7 410 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 UEVLDQ8IX04 471 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 LILRB1Q8NHL6 650 aaPredicted RBP14.15□□□□□ -0.14
TRIM28-213ENST00000598355 PFN4Q8NHR9 129 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 MAGEE2Q8TD90 523 aaPredicted RBP14.15□□□□□ -0.14
TRIM28-213ENST00000598355 TMEM239Q8WW34 195 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 MUCL1Q96DR8 90 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 HSH2DQ96JZ2 352 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 HS6ST2Q96MM7 605 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 PIP5K1AQ99755 562 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 ESRP2Q9H6T0 727 aaKnown RBP14.15□□□□□ -0.14
TRIM28-213ENST00000598355 NANSQ9NR45 359 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 TAS2R5Q9NYW4 299 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 AMDHD2Q9Y303 409 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 RNF115Q9Y4L5 304 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 SNX13Q9Y5W8 968 aa14.15□□□□□ -0.14
TRIM28-213ENST00000598355 MAP1AP78559 2803 aaPredicted RBP14.14□□□□□ -0.15
TRIM28-213ENST00000598355 USF3Q68DE3 2245 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 VPS13CQ709C8 3753 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 HTR3EA5X5Y0 456 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 KPNA4O00629 521 aaPredicted RBP14.14□□□□□ -0.15
TRIM28-213ENST00000598355 HS3ST1O14792 307 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 GSTA4O15217 222 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 SLC43A1O75387 559 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 CH25HO95992 272 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 NCK1P16333 377 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 ART1P52961 327 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 BSPH1Q075Z2 132 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 C1DQ13901 141 aaKnown RBP14.14□□□□□ -0.15
TRIM28-213ENST00000598355 DEFB113Q30KQ7 82 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 LRRC17Q8N6Y2 441 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 PIK3C3Q8NEB9 887 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 OR1K1Q8NGR3 316 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 LRR1Q96L50 414 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 GORASP2Q9H8Y8 452 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 OBP2BQ9NPH6 170 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 C20orf141Q9NUB4 165 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 DCAF13Q9NV06 445 aaKnown RBP14.14□□□□□ -0.15
TRIM28-213ENST00000598355 BEX4Q9NWD9 120 aaPredicted RBP14.14□□□□□ -0.15
TRIM28-213ENST00000598355 NDE1Q9NXR1 346 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 EGFL7Q9UHF1 273 aa14.14□□□□□ -0.15
TRIM28-213ENST00000598355 RPS6KA6Q9UK32 745 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms