RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 IL1RL1Q01638 556 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 ROR2Q01974 943 aaKnown RBP13.16□□□□□ -0.3
LIG1-215ENST00000597901 KLF10Q13118 480 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 PMS2P3Q13401 168 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 NPTX1Q15818 432 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 VMACQ2NL98 169 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 SWT1Q5T5J6 900 aaKnown RBP13.16□□□□□ -0.3
LIG1-215ENST00000597901 C11orf71Q6IPW1 123 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 ZNF544Q6NX49 715 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 ANKRD16Q6P6B7 361 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 ZNF613Q6PF04 617 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 MUC15Q8N387 334 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 ADPRHL1Q8NDY3 354 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 OR4D11Q8NGI4 311 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 MAGEE2Q8TD90 523 aaPredicted RBP13.16□□□□□ -0.3
LIG1-215ENST00000597901 LRRC58Q96CX6 371 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 MOGAT1Q96PD6 335 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 ALKBH3Q96Q83 286 aaPredicted RBP13.16□□□□□ -0.3
LIG1-215ENST00000597901 SH3GL1Q99961 368 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 TMEM43Q9BTV4 400 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 GPR35Q9HC97 309 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 SAR1AQ9NR31 198 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 FGFR1OP2Q9NVK5 253 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 CORINQ9Y5Q5 1042 aa13.16□□□□□ -0.3
LIG1-215ENST00000597901 CADP27708 2225 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 LOC100653049A0A140TA62 436 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 RNF223E7ERA6 249 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 LRRN3E7EW58 273 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 KRT34O76011 436 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 LYPD3O95274 346 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 NPPAP01160 153 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 VIMP08670 466 aaKnown RBP13.15□□□□□ -0.3
LIG1-215ENST00000597901 HLA-DOBP13765 273 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 NQO1P15559 274 aaKnown RBP13.15□□□□□ -0.3
LIG1-215ENST00000597901 CD247P20963 164 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 APOBEC3AP31941 199 aaPredicted RBP13.15□□□□□ -0.3
LIG1-215ENST00000597901 PCGF2P35227 344 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 VEZF1Q14119 521 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 TRMT5Q32P41 509 aaKnown RBP13.15□□□□□ -0.3
LIG1-215ENST00000597901 MMEL1Q495T6 779 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 RABL3Q5HYI8 236 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 ENTPD8Q5MY95 495 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 INTS11Q5TA45 600 aaKnown RBP13.15□□□□□ -0.3
LIG1-215ENST00000597901 CGB2Q6NT52 195 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 DNM1P46Q6ZS02 220 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 CCDC80Q76M96 950 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 UEVLDQ8IX04 471 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 GPR137CQ8N3F9 429 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 C10orf53Q8N6V4 93 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 SCAIQ8N9R8 606 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 PIK3C3Q8NEB9 887 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 SLC26A7Q8TE54 656 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 TAMM41Q96BW9 452 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 ZNF837Q96EG3 531 aaPredicted RBP13.15□□□□□ -0.3
LIG1-215ENST00000597901 TXNDC15Q96J42 360 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 ADAD1Q96M93 576 aaKnown RBP13.15□□□□□ -0.3
LIG1-215ENST00000597901 HS6ST2Q96MM7 605 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 ZNF317Q96PQ6 595 aaPredicted RBP13.15□□□□□ -0.3
LIG1-215ENST00000597901 OR2M2Q96R28 347 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 ECSITQ9BQ95 431 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 ASPNQ9BXN1 380 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 CACNG6Q9BXT2 260 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 REG4Q9BYZ8 158 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 BARX1Q9HBU1 254 aaPredicted RBP13.15□□□□□ -0.3
LIG1-215ENST00000597901 MRGBPQ9NV56 204 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 MRPL39Q9NYK5 338 aaKnown RBP13.15□□□□□ -0.3
LIG1-215ENST00000597901 MOKQ9UQ07 419 aa13.15□□□□□ -0.3
LIG1-215ENST00000597901 ARPC4-TTLL3A0A0A6YYG9 625 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 IGHV1-18A0A0C4DH31 117 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 CPSF4LA6NMK7 179 aaKnown RBP13.14□□□□□ -0.31
LIG1-215ENST00000597901 ATP6V1G2-DDX39BF2Z307 99 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 PLPP3O14495 311 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 TRAF3IP2O43734 574 aaPredicted RBP13.14□□□□□ -0.31
LIG1-215ENST00000597901 SSX4O60224 188 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 THY1P04216 161 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 SH3BGRP55822 239 aaPredicted RBP13.14□□□□□ -0.31
LIG1-215ENST00000597901 TUBA1BP68363 451 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 TUBA4AP68366 448 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 RAB35Q15286 201 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 COQ5Q5HYK3 327 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 PHYHD1Q5SRE7 291 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 TUBA1AQ71U36 451 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 CALHM3Q86XJ0 350 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 TMEM123Q8N131 208 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 VANGL1Q8TAA9 524 aaPredicted RBP13.14□□□□□ -0.31
LIG1-215ENST00000597901 SLC38A2Q96QD8 506 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 EMC6Q9BV81 110 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 NELFAQ9H3P2 528 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 CRLF2Q9HC73 371 aa13.14□□□□□ -0.31
LIG1-215ENST00000597901 CRNNQ9UBG3 495 aaPredicted RBP13.14□□□□□ -0.31
LIG1-215ENST00000597901 SLC35F4A4IF30 521 aa13.13□□□□□ -0.31
LIG1-215ENST00000597901 M0R3G1 203 aa13.13□□□□□ -0.31
LIG1-215ENST00000597901 CHP2O43745 196 aa13.13□□□□□ -0.31
LIG1-215ENST00000597901 AKAP8O43823 692 aaKnown RBP13.13□□□□□ -0.31
LIG1-215ENST00000597901 MT-ATP6P00846 226 aa13.13□□□□□ -0.31
LIG1-215ENST00000597901 CBR1P16152 277 aa13.13□□□□□ -0.31
LIG1-215ENST00000597901 AHCYP23526 432 aa13.13□□□□□ -0.31
LIG1-215ENST00000597901 CRYBA2P53672 197 aa13.13□□□□□ -0.31
LIG1-215ENST00000597901 GUCY1A3Q02108 690 aa13.13□□□□□ -0.31
LIG1-215ENST00000597901 CHRNB3Q05901 458 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms