RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 RELTQ969Z4 430 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 SARAFQ96BY9 339 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 IL4I1Q96RQ9 567 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 SF3B5Q9BWJ5 86 aaKnown RBP13.67□□□□□ -0.22
TRIM28-209ENST00000597423 TXNIPQ9H3M7 391 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 PRORYQ9H606 182 aa13.67□□□□□ -0.22
TRIM28-209ENST00000597423 ZNF71Q9NQZ8 489 aaPredicted RBP13.67□□□□□ -0.22
TRIM28-209ENST00000597423 MCTS1Q9ULC4 181 aaKnown RBP13.67□□□□□ -0.22
TRIM28-209ENST00000597423 PRR23D1E9PI22 279 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-209ENST00000597423 NPIPA5E9PKD4 350 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 K7EM74 188 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 AQP7O14520 342 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 PRKYO43930 277 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 BCL10O95999 233 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 RPSAP08865 295 aaKnown RBP13.66□□□□□ -0.22
TRIM28-209ENST00000597423 CCDC159P0C7I6 412 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 PRR23D2P0DMB1 279 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-209ENST00000597423 ZNF43P17038 809 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 CLDN15P56746 228 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 H3F3AP84243 136 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 EFNB1P98172 346 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 SRYQ05066 204 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 GXYLT1Q4G148 440 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 GTF2IRD2BQ6EKJ0 949 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 ADCK1Q86TW2 530 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 GTF2IRD2Q86UP8 949 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 IGFN1Q86VF2 1251 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 CCDC71Q8IV32 467 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-209ENST00000597423 ARIH2OSQ8N7S6 290 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 OR52E2Q8NGJ4 325 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 OR10D3Q8NH80 312 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 UBE2FQ969M7 185 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 ADGRG7Q96K78 797 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 TIMP4Q99727 224 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 PRRG4Q9BZD6 226 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 ZNF346Q9UL40 294 aaKnown RBP13.66□□□□□ -0.22
TRIM28-209ENST00000597423 NPIPA1Q9UND3 350 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 LHX6Q9UPM6 363 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 RPL36Q9Y3U8 105 aaKnown RBP13.66□□□□□ -0.22
TRIM28-209ENST00000597423 CACNA1AO00555 2505 aa13.66□□□□□ -0.22
TRIM28-209ENST00000597423 EML6Q6ZMW3 1958 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 PCNX3Q9H6A9 2034 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 IRGMA1A4Y4 181 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 OR14I1A6ND48 311 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 ZNF726A6NNF4 738 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 NPIPA2E9PIF3 369 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 NPIPA3F8WFD2 350 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 AHCYL1O43865 530 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 CXCL13O43927 109 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 RENP00797 406 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 IGHMP01871 453 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 GABRB1P18505 474 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 SUCLG1P53597 346 aaKnown RBP13.65□□□□□ -0.22
TRIM28-209ENST00000597423 CLDN18P56856 261 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 HSF1Q00613 529 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.65□□□□□ -0.22
TRIM28-209ENST00000597423 LGALS3BPQ08380 585 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 ITGADQ13349 1161 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 ACKR1Q16570 336 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 CTU2Q2VPK5 515 aaKnown RBP13.65□□□□□ -0.22
TRIM28-209ENST00000597423 TMEM201Q5SNT2 666 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 GPAT4Q86UL3 456 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 GID4Q8IVV7 300 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 BPIFB6Q8NFQ5 453 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 CNIH3Q8TBE1 160 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 IPCEF1Q8WWN9 437 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-209ENST00000597423 OTULINQ96BN8 352 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 LRR1Q96L50 414 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 PLCXD1Q9NUJ7 323 aa13.65□□□□□ -0.22
TRIM28-209ENST00000597423 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.65□□□□□ -0.22
TRIM28-209ENST00000597423 FREM2Q5SZK8 3169 aa13.65□□□□□ -0.23
TRIM28-209ENST00000597423 TEX13CA0A0J9YWL9 993 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 AKAP8O43823 692 aaKnown RBP13.64□□□□□ -0.23
TRIM28-209ENST00000597423 FAM20BO75063 409 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 SERPINI2O75830 405 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 HIST1H1CP16403 213 aaKnown RBP13.64□□□□□ -0.23
TRIM28-209ENST00000597423 EEF1B2P24534 225 aaKnown RBP13.64□□□□□ -0.23
TRIM28-209ENST00000597423 ACVR1BP36896 505 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 POU3F1Q03052 451 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-209ENST00000597423 TMED1Q13445 227 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 POU4F3Q15319 338 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 KCTD21Q4G0X4 260 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 NXNL2Q5VZ03 156 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 SLC35D2Q76EJ3 337 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 CXXC5Q7LFL8 322 aaKnown RBP13.64□□□□□ -0.23
TRIM28-209ENST00000597423 FAM122BQ7Z309 247 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 CPOQ8IVL8 374 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 SIAH3Q8IW03 269 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 KDM8Q8N371 416 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 OR4K13Q8NH42 304 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 MYDGFQ969H8 173 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 ZNF566Q969W8 418 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 Q96M85 177 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 ADAD1Q96M93 576 aaKnown RBP13.64□□□□□ -0.23
TRIM28-209ENST00000597423 SNX18Q96RF0 628 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 TAAR6Q96RI8 345 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 SEC14L4Q9UDX3 406 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 CAMK2AQ9UQM7 478 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 ADAM18Q9Y3Q7 739 aa13.64□□□□□ -0.23
TRIM28-209ENST00000597423 EFCAB10A6NFE3 127 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms