RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 HIST1H2ABP04908 130 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 THBDP07204 575 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 ASAH2BP0C7U1 165 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 ADORA3P0DMS8 318 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 DNAJA1P31689 397 aaKnown RBP10.49□□□□□ -0.73
LIG3-213ENST00000590630 MSX2P35548 267 aaPredicted RBP10.49□□□□□ -0.73
LIG3-213ENST00000590630 YAP1P46937 504 aaKnown RBP10.49□□□□□ -0.73
LIG3-213ENST00000590630 SELENOPP49908 381 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 UGT2B15P54855 530 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 CLDN17P56750 224 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 KRTAP10-9P60411 292 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 POU3F1Q03052 451 aaPredicted RBP10.49□□□□□ -0.73
LIG3-213ENST00000590630 TGFBR3Q03167 851 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 TRAM2Q15035 370 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 TSC22D1Q15714 1073 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 MS4A18Q3C1V0 323 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 TIMM23BQ5SRD1 257 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 TSPO2Q5TGU0 170 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 OR7E24Q6IFN5 339 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 NIPAL3Q6P499 406 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 RINLQ6ZS11 566 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 C22orf34Q6ZV56 151 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 HIST3H2AQ7L7L0 130 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 C1orf162Q8NEQ5 155 aaPredicted RBP10.49□□□□□ -0.73
LIG3-213ENST00000590630 HIST1H2ACQ93077 130 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 PYURFQ96I23 114 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 LINC00470Q9BZP3 86 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 MUC13Q9H3R2 512 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 ANKRD19PQ9H560 264 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 MAN2C1Q9NTJ4 1040 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 TAS2R1Q9NYW7 299 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 ACTR3BQ9P1U1 418 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 FAM32AQ9Y421 112 aaKnown RBP10.49□□□□□ -0.73
LIG3-213ENST00000590630 CELSR1Q9NYQ6 3014 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 CADP27708 2225 aa10.49□□□□□ -0.73
LIG3-213ENST00000590630 CIB4A0PJX0 185 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 OR5H1A6NKK0 313 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 DEFB108AA8MXU0 73 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 ZNF587BE7ETH6 402 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 J3KTA2 159 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 SLC43A1O75387 559 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 OR7A10O76100 309 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 UBOX5O94941 541 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 PRSS23O95084 383 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 ITGA5P08648 1049 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 UMPSP11172 480 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 ITGA2P17301 1181 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 RHCEP18577 417 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 AHCYP23526 432 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 MPGP29372 298 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 NR1H2P55055 460 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 ZP4Q12836 540 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 TAB1Q15750 504 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 BEX5Q5H9J7 111 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 MTX3Q5HYI7 312 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 C1QTNF12Q5T7M4 302 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 SLC46A3Q7Z3Q1 461 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 NANOGNBQ7Z5D8 188 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 CDC20BQ86Y33 519 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 RNF113BQ8IZP6 322 aaKnown RBP10.48□□□□□ -0.73
LIG3-213ENST00000590630 C17orf78Q8N4C9 275 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 LRRC17Q8N6Y2 441 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 FAM86B1Q8N7N1 296 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 ANKK1Q8NFD2 765 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 PFN4Q8NHR9 129 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 LIPHQ8WWY8 451 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 ACOT11Q8WXI4 607 aaPredicted RBP10.48□□□□□ -0.73
LIG3-213ENST00000590630 MUCL1Q96DR8 90 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 SGTBQ96EQ0 304 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 C7orf34Q96L11 122 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 NMNAT1Q9HAN9 279 aaPredicted RBP10.48□□□□□ -0.73
LIG3-213ENST00000590630 NGBQ9NPG2 151 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 C20orf141Q9NUB4 165 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 TAS2R5Q9NYW4 299 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 NDUFAF4Q9P032 175 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 RHCGQ9UBD6 479 aa10.48□□□□□ -0.73
LIG3-213ENST00000590630 HEATR1Q9H583 2144 aaKnown RBP10.48□□□□□ -0.73
LIG3-213ENST00000590630 A0A1W2PRQ8 180 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 SIAH2O43255 324 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 KLF4O43474 513 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 RAD51DO75771 328 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 SEMG1P04279 462 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 H1F0P07305 194 aaKnown RBP10.47□□□□□ -0.73
LIG3-213ENST00000590630 HLA-DOBP13765 273 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 FUT1P19526 365 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 VLDLRP98155 873 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 FOXD4Q12950 439 aaPredicted RBP10.47□□□□□ -0.73
LIG3-213ENST00000590630 DGCR6Q14129 220 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 TRIM25Q14258 630 aaKnown RBP10.47□□□□□ -0.73
LIG3-213ENST00000590630 STK11Q15831 433 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 GABRA6Q16445 453 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 DNAL1Q4LDG9 190 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 NHLRC1Q6VVB1 395 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 ZNF730Q6ZMV8 503 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 TSEN54Q7Z6J9 526 aaKnown RBP10.47□□□□□ -0.73
LIG3-213ENST00000590630 WFDC8Q8IUA0 241 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 TMEM123Q8N131 208 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 PIK3C3Q8NEB9 887 aa10.47□□□□□ -0.73
LIG3-213ENST00000590630 POP5Q969H6 163 aaKnown RBP10.47□□□□□ -0.73
LIG3-213ENST00000590630 MCUR1Q96AQ8 359 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms