RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 WIPF3A6NGB9 483 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 FTCDNL1E5RQL4 147 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 E9PQ18 207 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 DVL2O14641 736 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 CYTIPO60759 359 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 FZD7O75084 574 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 SNAP29O95721 258 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 IL18BPO95998 194 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 IFI30P13284 250 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 CTSSP25774 331 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 OPRM1P35372 400 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 ADARB1P78563 741 aaKnown RBP13.84□□□□□ -0.19
SS18-216ENST00000580751 H3F3AP84243 136 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 SRSF1Q07955 248 aaKnown RBP eCLIP13.84□□□□□ -0.19
SS18-216ENST00000580751 NPRL3Q12980 569 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 KEAP1Q14145 624 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 ABLIM2Q6H8Q1 611 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 XKRXQ6PP77 449 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 KLHL17Q6TDP4 642 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 CCDC71Q8IV32 467 aaPredicted RBP13.84□□□□□ -0.19
SS18-216ENST00000580751 P3H2Q8IVL5 708 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 GCNT2Q8N0V5 402 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 NAXEQ8NCW5 288 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 ABHD3Q8WU67 409 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 ITLN2Q8WWU7 325 aaPredicted RBP13.84□□□□□ -0.19
SS18-216ENST00000580751 ROBO4Q8WZ75 1007 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 TAAR8Q969N4 342 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 GTPBP3Q969Y2 492 aaKnown RBP13.84□□□□□ -0.19
SS18-216ENST00000580751 INTS12Q96CB8 462 aaKnown RBP13.84□□□□□ -0.19
SS18-216ENST00000580751 SGTBQ96EQ0 304 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 GMPPAQ96IJ6 420 aaPredicted RBP13.84□□□□□ -0.19
SS18-216ENST00000580751 NIPSNAP1Q9BPW8 284 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 ANKRD60Q9BZ19 345 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 GRIP2Q9C0E4 1043 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 TOR3AQ9H497 397 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 MEPEQ9NQ76 525 aaPredicted RBP13.84□□□□□ -0.19
SS18-216ENST00000580751 FAM118AQ9NWS6 357 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 IL20Q9NYY1 176 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 ZNF629Q9UEG4 869 aaPredicted RBP13.84□□□□□ -0.19
SS18-216ENST00000580751 LRCH1Q9Y2L9 728 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 EMC9Q9Y3B6 208 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 CORINQ9Y5Q5 1042 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 HSPE1-MOB4S4R3N1 261 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 USP9YO00507 2555 aaPredicted RBP13.84□□□□□ -0.19
SS18-216ENST00000580751 MED12LQ86YW9 2145 aa13.84□□□□□ -0.19
SS18-216ENST00000580751 EFCAB9A8MZ26 197 aa13.83□□□□□ -0.2
SS18-216ENST00000580751 KPNA4O00629 521 aaPredicted RBP13.83□□□□□ -0.2
SS18-216ENST00000580751 SS18L1O75177 396 aaPredicted RBP13.83□□□□□ -0.2
SS18-216ENST00000580751 PTNP21246 168 aa13.83□□□□□ -0.2
SS18-216ENST00000580751 LSRQ86X29 649 aaPredicted RBP13.83□□□□□ -0.2
SS18-216ENST00000580751 C10orf53Q8N6V4 93 aa13.83□□□□□ -0.2
SS18-216ENST00000580751 CA5BP1Q8WTZ4 195 aa13.83□□□□□ -0.2
SS18-216ENST00000580751 SLC25A36Q96CQ1 311 aa13.83□□□□□ -0.2
SS18-216ENST00000580751 PITX2Q99697 317 aa13.83□□□□□ -0.2
SS18-216ENST00000580751 NDEL1Q9GZM8 345 aa13.83□□□□□ -0.2
SS18-216ENST00000580751 FKRPQ9H9S5 495 aa13.83□□□□□ -0.2
SS18-216ENST00000580751 EMC3Q9P0I2 261 aa13.83□□□□□ -0.2
SS18-216ENST00000580751 KLHL13Q9P2N7 655 aa13.83□□□□□ -0.2
SS18-216ENST00000580751 REV1Q9UBZ9 1251 aa13.83□□□□□ -0.2
SS18-216ENST00000580751 ZNF229Q9UJW7 825 aa13.83□□□□□ -0.2
SS18-216ENST00000580751 INTS1Q8N201 2190 aaKnown RBP13.82□□□□□ -0.2
SS18-216ENST00000580751 LOC100130705A0A1B0GUX0 176 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 A0A1W2PNV4 684 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 UNC119BA6NIH7 251 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 AQP7P3A6NL99 342 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 ENO4A6NNW6 628 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 AKR7A3O95154 331 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 VAMP5O95183 116 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 CRISP1P54107 249 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 RASGEF1BQ0VAM2 473 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 MED21Q13503 144 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 PDK3Q15120 406 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 GUSBP1Q15486 140 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 ZNF74Q16587 644 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 SLC25A35Q3KQZ1 300 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 FAM214BQ7L5A3 538 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 MAMDC2Q7Z304 686 aaPredicted RBP13.82□□□□□ -0.2
SS18-216ENST00000580751 CNEP1R1Q8N9A8 125 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 SCAIQ8N9R8 606 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 SETD9Q8NE22 299 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 FAM46AQ96IP4 442 aaKnown RBP13.82□□□□□ -0.2
SS18-216ENST00000580751 HRASLS5Q96KN8 279 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 MBOAT4Q96T53 435 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 APOL4Q9BPW4 351 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 ASPNQ9BXN1 380 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 TEX12Q9BXU0 123 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 NDRG4Q9ULP0 352 aaKnown RBP13.82□□□□□ -0.2
SS18-216ENST00000580751 B3GALT5Q9Y2C3 310 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 CDH10Q9Y6N8 788 aa13.82□□□□□ -0.2
SS18-216ENST00000580751 IGKV3D-15A0A087WSY6 115 aa13.81□□□□□ -0.2
SS18-216ENST00000580751 ZNF724A8MTY0 619 aa13.81□□□□□ -0.2
SS18-216ENST00000580751 M0R082 166 aa13.81□□□□□ -0.2
SS18-216ENST00000580751 GPR171O14626 319 aa13.81□□□□□ -0.2
SS18-216ENST00000580751 PTP4A3O75365 173 aa13.81□□□□□ -0.2
SS18-216ENST00000580751 TNFSF13O75888 250 aa13.81□□□□□ -0.2
SS18-216ENST00000580751 OR7A10O76100 309 aa13.81□□□□□ -0.2
SS18-216ENST00000580751 BGLAPP02818 100 aa13.81□□□□□ -0.2
SS18-216ENST00000580751 SAGP10523 405 aaPredicted RBP13.81□□□□□ -0.2
SS18-216ENST00000580751 POU2F1P14859 743 aa13.81□□□□□ -0.2
SS18-216ENST00000580751 KLK2P20151 261 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms