RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ZNF611Q8N823 705 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 ADPRHL1Q8NDY3 354 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 C1orf162Q8NEQ5 155 aaPredicted RBP7.13□□□□□ -1.27
VPS53-214ENST00000572607 OR2T12Q8NG77 320 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 OR6S1Q8NH40 331 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 OR52N5Q8NH56 324 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 C10orf82Q8WW14 230 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 FBXW5Q969U6 566 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 RADILQ96JH8 1075 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 ZNF385AQ96PM9 386 aaKnown RBP7.13□□□□□ -1.27
VPS53-214ENST00000572607 TMEM204Q9BSN7 226 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 TMEM43Q9BTV4 400 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 PTDSS2Q9BVG9 487 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 FAM107BQ9H098 131 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 GSX1Q9H4S2 264 aaPredicted RBP7.13□□□□□ -1.27
VPS53-214ENST00000572607 SLC7A10Q9NS82 523 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 FAIMQ9NVQ4 179 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 ARMCX1Q9P291 453 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 POU2F3Q9UKI9 436 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 MGAT4BQ9UQ53 548 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 RCE1Q9Y256 329 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 AMDHD2Q9Y303 409 aa7.13□□□□□ -1.27
VPS53-214ENST00000572607 IGKV1D-42A0A075B6H8 117 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 KRTAP9-6A0A140TA67 174 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 TRAPPC13A5PLN9 417 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 FTCDNL1E5RQL4 147 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 FAM229AH3BQW9 127 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 M0R1B8 84 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 FXYD1O00168 92 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 MT-ATP6P00846 226 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 ITGA5P08648 1049 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 COX4I1P13073 169 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 CDH2P19022 906 aaPredicted RBP7.12□□□□□ -1.27
VPS53-214ENST00000572607 CBLP22681 906 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 PAX7P23759 505 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 PTAFRP25105 342 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 LOXP28300 417 aaPredicted RBP7.12□□□□□ -1.27
VPS53-214ENST00000572607 SELENOPP49908 381 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 ZNF83P51522 516 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 P2RY4P51582 365 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 SH3BGRP55822 239 aaPredicted RBP7.12□□□□□ -1.27
VPS53-214ENST00000572607 CLDN17P56750 224 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 TAS2R41P59536 307 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 PRPS1P60891 318 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 UBE2NP61088 152 aaKnown RBP7.12□□□□□ -1.27
VPS53-214ENST00000572607 RPS4XP62701 263 aaKnown RBP7.12□□□□□ -1.27
VPS53-214ENST00000572607 EGR4Q05215 589 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 PMS2P3Q13401 168 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 NRF1Q16656 503 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 LRRC23Q53EV4 343 aaPredicted RBP7.12□□□□□ -1.27
VPS53-214ENST00000572607 HMBOX1Q6NT76 420 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 ADAM5Q6NVV9 412 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 SPATA21Q7Z572 469 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 CPLX4Q7Z7G2 160 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 COMTD1Q86VU5 262 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 CALHM3Q86XJ0 350 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 EPHX4Q8IUS5 362 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 KDM8Q8N371 416 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 GPR137CQ8N3F9 429 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 POU5F2Q8N7G0 328 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 SCAIQ8N9R8 606 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 PIK3C3Q8NEB9 887 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 GPR32P1Q8NGA4 272 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 OR6T1Q8NGN1 323 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 LZICQ8WZA0 190 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 TAAR8Q969N4 342 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 TAMM41Q96BW9 452 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 RCN3Q96D15 328 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 CMTM5Q96DZ9 223 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 PERPQ96FX8 193 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 MPP4Q96JB8 637 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 MUS81Q96NY9 551 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 OXGR1Q96P68 337 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 ZNF317Q96PQ6 595 aaPredicted RBP7.12□□□□□ -1.27
VPS53-214ENST00000572607 ALKBH3Q96Q83 286 aaPredicted RBP7.12□□□□□ -1.27
VPS53-214ENST00000572607 HOPXQ9BPY8 73 aaPredicted RBP7.12□□□□□ -1.27
VPS53-214ENST00000572607 ELAC2Q9BQ52 826 aaKnown RBP7.12□□□□□ -1.27
VPS53-214ENST00000572607 POLR2J2Q9GZM3 115 aaKnown RBP7.12□□□□□ -1.27
VPS53-214ENST00000572607 POLR2J3Q9H1A7 115 aaKnown RBP7.12□□□□□ -1.27
VPS53-214ENST00000572607 EFCAB1Q9HAE3 211 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 MOV10Q9HCE1 1003 aaKnown RBP7.12□□□□□ -1.27
VPS53-214ENST00000572607 OBP2BQ9NPH6 170 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 B3GAT2Q9NPZ5 323 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 SH3GLB1Q9Y371 365 aa7.12□□□□□ -1.27
VPS53-214ENST00000572607 HEATR5AQ86XA9 2040 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 SCO2A0A1W2PP80 73 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 A0A1W2PR80 420 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 ELOVL7A1L3X0 281 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 DPRXA6NFQ7 191 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 ZNF726A6NNF4 738 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 PDLIM1O00151 329 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 KPNA4O00629 521 aaPredicted RBP7.11□□□□□ -1.27
VPS53-214ENST00000572607 ABCD4O14678 606 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 GSTA4O15217 222 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 PLAUP00749 431 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 HIST1H2ABP04908 130 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 UMPSP11172 480 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 PTNP21246 168 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 AHCYP23526 432 aa7.11□□□□□ -1.27
VPS53-214ENST00000572607 NTF4P34130 210 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms