RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TBC1D24Q9ULP9 559 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 RUVBL2Q9Y230 463 aaKnown RBP5.46□□□□□ -1.54
VPS53-212ENST00000572259 FARSAQ9Y285 508 aaKnown RBP5.46□□□□□ -1.54
VPS53-212ENST00000572259 KLK4Q9Y5K2 254 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 SCN3AQ9NY46 2000 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 NBEAQ8NFP9 2946 aa5.46□□□□□ -1.54
VPS53-212ENST00000572259 SCN2AQ99250 2005 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 ATRXP46100 2492 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 FER1L5A0AVI2 2057 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 LOC101059948A0A1B0GTJ6 334 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 A0A1W2PPV4 95 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 TUBAL3A6NHL2 446 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 VGLL3A8MV65 326 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 ARHGEF33A8MVX0 844 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 F8VVB4 439 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 F8VWA3 439 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 CHEK1O14757 476 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 ZNF749O43361 778 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 CRYGBP07316 175 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 ANXA5P08758 320 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 TFPIP10646 304 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 PVRP15151 417 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 MAGP20916 626 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 TUBG1P23258 451 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 SSTR1P30872 391 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 PTGER4P35408 488 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 MMP15P51511 669 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 BCAP31P51572 246 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 ARHGDIBP52566 201 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 CLDN15P56746 228 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 RGS8P57771 180 aaPredicted RBP5.45□□□□□ -1.54
VPS53-212ENST00000572259 DCDP81605 110 aaKnown RBP5.45□□□□□ -1.54
VPS53-212ENST00000572259 MRPS25P82663 173 aaKnown RBP5.45□□□□□ -1.54
VPS53-212ENST00000572259 RELAQ04206 551 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 PRDX1Q06830 199 aaKnown RBP5.45□□□□□ -1.54
VPS53-212ENST00000572259 MAD2L1Q13257 205 aaPredicted RBP5.45□□□□□ -1.54
VPS53-212ENST00000572259 PYHIN1Q6K0P9 492 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 CAPN13Q6MZZ7 669 aaPredicted RBP5.45□□□□□ -1.54
VPS53-212ENST00000572259 RHBDD2Q6NTF9 364 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 CYHR1Q6ZMK1 362 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 ZNF788Q6ZQV5 615 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 FRA10AC1Q70Z53 315 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 TIPARPQ7Z3E1 657 aaKnown RBP5.45□□□□□ -1.54
VPS53-212ENST00000572259 IFT20Q8IY31 132 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 FAM58AQ8N1B3 248 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 DNAJC22Q8N4W6 341 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 LINC01555Q8NAE3 123 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 SEMA6DQ8NFY4 1073 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 OR2L3Q8NG85 312 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 OR1L3Q8NH93 324 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 OSR1Q8TAX0 266 aaPredicted RBP5.45□□□□□ -1.54
VPS53-212ENST00000572259 LRRC20Q8TCA0 184 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 IFT81Q8WYA0 676 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 PHYHIPQ92561 330 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 MARK4Q96L34 752 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 IP6K3Q96PC2 410 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 IL17FQ96PD4 163 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 SELENOSQ9BQE4 189 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 HAUS8Q9BT25 410 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 DPH7Q9BTV6 452 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 LMF2Q9BU23 707 aaKnown RBP5.45□□□□□ -1.54
VPS53-212ENST00000572259 ANKRD60Q9BZ19 345 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 SPRTNQ9H040 489 aaPredicted RBP5.45□□□□□ -1.54
VPS53-212ENST00000572259 TUBG2Q9NRH3 451 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 EURLQ9NYK6 297 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 EMC3Q9P0I2 261 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 KLHL13Q9P2N7 655 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 CTSFQ9UBX1 484 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 CIDEBQ9UHD4 219 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 ERRFI1Q9UJM3 462 aaPredicted RBP5.45□□□□□ -1.54
VPS53-212ENST00000572259 ZFHX4Q86UP3 3567 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 LOC400499M0QZD8 3231 aa5.45□□□□□ -1.54
VPS53-212ENST00000572259 FASNP49327 2511 aaKnown RBP5.44□□□□□ -1.54
VPS53-212ENST00000572259 TLN1Q9Y490 2541 aaKnown RBP5.44□□□□□ -1.54
VPS53-212ENST00000572259 LOC105371242A0A075B767 164 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 TCRBV9S1A1TA0A576 114 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 METTL21EPA6NDL7 271 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 CXorf65A6NEN9 183 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 FAM159BA6NKW6 160 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 LINC01548A6NM66 108 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 SNTNA6NMZ2 147 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 NPIPA2E9PIF3 369 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 J3QR06 171 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 FOXE1O00358 373 aaPredicted RBP5.44□□□□□ -1.54
VPS53-212ENST00000572259 SDHDO14521 159 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 ATP6AP2O75787 350 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 MBP02144 154 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 ERGP11308 486 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 EZRP15311 586 aaKnown RBP5.44□□□□□ -1.54
VPS53-212ENST00000572259 MAOAP21397 527 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 CRABP2P29373 138 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 CCNG1P51959 295 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 CDKN2DP55273 166 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 KCNK10P57789 538 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 ATP6V0D1P61421 351 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 RPS15AP62244 130 aaKnown RBP5.44□□□□□ -1.54
VPS53-212ENST00000572259 RAB11AP62491 216 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 SKP1P63208 163 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 KRTAP1-1Q07627 177 aa5.44□□□□□ -1.54
VPS53-212ENST00000572259 UBE2V1Q13404 147 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms