RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 CACNG2Q9Y698 323 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 TET2Q6N021 2002 aaPredicted RBP15.27■□□□□ 0.04
CLK3-227ENST00000570296 MDFIC2A0A1B0GVS7 189 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 DUXAA6NLW8 204 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 ZNF99A8MXY4 864 aaPredicted RBP15.27■□□□□ 0.04
CLK3-227ENST00000570296 TPD52L2O43399 206 aaKnown RBP15.27■□□□□ 0.04
CLK3-227ENST00000570296 HLA-HP01893 362 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 CSF1P09603 554 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 TACR3P29371 465 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 ETF1P62495 437 aaKnown RBP15.27■□□□□ 0.04
CLK3-227ENST00000570296 SLC3A1Q07837 685 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 CEACAM16Q2WEN9 425 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 FAM153CQ494X1 144 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 R3HCC1LQ7Z5L2 792 aaKnown RBP15.27■□□□□ 0.04
CLK3-227ENST00000570296 LRRC8AQ8IWT6 810 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 NOA1Q8NC60 698 aaKnown RBP15.27■□□□□ 0.04
CLK3-227ENST00000570296 KIF18AQ8NI77 898 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 OR5P2Q8WZ92 322 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 PPP1R14AQ96A00 147 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 L3HYPDHQ96EM0 354 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 DENND2DQ9H6A0 471 aaPredicted RBP15.27■□□□□ 0.04
CLK3-227ENST00000570296 C1orf109Q9NX04 203 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 SLCO1C1Q9NYB5 712 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 RASD1Q9Y272 281 aa15.27■□□□□ 0.04
CLK3-227ENST00000570296 TANC2Q9HCD6 1990 aa15.27■□□□□ 0.03
CLK3-227ENST00000570296 IGLV3-9A0A075B6K5 115 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 SLC43A1O75387 559 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 CHRM4P08173 479 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 GUSBP08236 651 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 LSP1P33241 339 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 PRKAA2P54646 552 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 KLF3P57682 345 aaPredicted RBP15.26■□□□□ 0.03
CLK3-227ENST00000570296 ARHGAP11BQ3KRB8 267 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 FAM209AQ5JX71 171 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 RGS7BPQ6MZT1 257 aaPredicted RBP15.26■□□□□ 0.03
CLK3-227ENST00000570296 JAZF1Q86VZ6 243 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 GPR137CQ8N3F9 429 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 TMEM86BQ8N661 226 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 CLHC1Q8NHS4 586 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 LINC01006Q8NI28 216 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 ZDHHC16Q969W1 377 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 ZNF837Q96EG3 531 aaPredicted RBP15.26■□□□□ 0.03
CLK3-227ENST00000570296 TAPBPLQ9BX59 468 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 ADPRHL2Q9NX46 363 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 FBXL3Q9UKT7 428 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 DOCK11Q5JSL3 2073 aa15.26■□□□□ 0.03
CLK3-227ENST00000570296 IGHV3OR16-10A0A075B7F0 116 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 SCN2BO60939 215 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 CLPTM1O96005 669 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 OPN1MWP04001 364 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 MYZAPP0CAP1 466 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 OPN1MW2P0DN77 364 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 OPN1MW3P0DN78 364 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 CD79AP11912 226 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 ATP5F1P24539 256 aaPredicted RBP15.25■□□□□ 0.03
CLK3-227ENST00000570296 PAX8Q06710 450 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 SLC22A9Q8IVM8 553 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 CHIAQ9BZP6 476 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 GSTO2Q9H4Y5 243 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 NOX4Q9NPH5 578 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 SLC6A13Q9NSD5 602 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 BAIAP2L1Q9UHR4 511 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 ATP6V1HQ9UI12 483 aa15.25■□□□□ 0.03
CLK3-227ENST00000570296 A8MXK9 166 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 H3BQF6 201 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 FAAHO00519 579 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 SHOX2O60902 331 aaPredicted RBP15.24■□□□□ 0.03
CLK3-227ENST00000570296 ZNF250P15622 560 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 HPCAL1P37235 193 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 CLDN17P56750 224 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 CAV1Q03135 178 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 PLAURQ03405 335 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 DEFB112Q30KQ8 113 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 OLIG3Q7RTU3 272 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 C16orf62Q7Z3J2 963 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 LSRQ86X29 649 aaPredicted RBP15.24■□□□□ 0.03
CLK3-227ENST00000570296 CREG2Q8IUH2 290 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 SYNPRQ8TBG9 265 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 CCL17Q92583 94 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 UPRTQ96BW1 309 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 ACSS3Q9H6R3 686 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 MARCH7Q9H992 704 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 POLE3Q9NRF9 147 aa15.24■□□□□ 0.03
CLK3-227ENST00000570296 DNAH9Q9NYC9 4486 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 FAM187AA6NFU0 413 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 AP3D1O14617 1153 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 CRCPO75575 148 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 RAB36O95755 333 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 MT-ND5P03915 603 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 SERPINB9P50453 376 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 PLTPP55058 493 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 RPS26P62854 115 aaKnown RBP15.23■□□□□ 0.03
CLK3-227ENST00000570296 KCNJ10P78508 379 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 MRPS25P82663 173 aaKnown RBP15.23■□□□□ 0.03
CLK3-227ENST00000570296 PIGFQ07326 219 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 MOGQ16653 247 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 LSM12Q3MHD2 195 aaKnown RBP15.23■□□□□ 0.03
CLK3-227ENST00000570296 ZNF620Q6ZNG0 422 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 TSPAN32Q96QS1 320 aa15.23■□□□□ 0.03
CLK3-227ENST00000570296 DIRC2Q96SL1 478 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms