RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 USP22Q9UPT9 525 aa6.83□□□□□ -1.32
CDH3-209ENST00000569080 MGAT4BQ9UQ53 548 aa6.83□□□□□ -1.32
CDH3-209ENST00000569080 HIVEP2P31629 2446 aa6.83□□□□□ -1.32
CDH3-209ENST00000569080 ARFGEF3Q5TH69 2177 aa6.83□□□□□ -1.32
CDH3-209ENST00000569080 ALPK2Q86TB3 2170 aa6.83□□□□□ -1.32
CDH3-209ENST00000569080 SONP18583 2426 aaKnown RBP6.82□□□□□ -1.32
CDH3-209ENST00000569080 ABCA2Q9BZC7 2435 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 OR6C65A6NJZ3 312 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 FAM171A2A8MVW0 826 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 MS4A18H0YCH9 400 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 M0QX08 132 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 SMAD7O15105 426 aaKnown RBP6.82□□□□□ -1.32
CDH3-209ENST00000569080 CHP2O43745 196 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 IGKV3-15P01624 115 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 ZNF43P17038 809 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 CDH2P19022 906 aaPredicted RBP6.82□□□□□ -1.32
CDH3-209ENST00000569080 ACVR1BP36896 505 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 SH3BGRP55822 239 aaPredicted RBP6.82□□□□□ -1.32
CDH3-209ENST00000569080 ROR2Q01974 943 aaKnown RBP6.82□□□□□ -1.32
CDH3-209ENST00000569080 KLF10Q13118 480 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 VMACQ2NL98 169 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 MS4A18Q3C1V0 323 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 PHYHD1Q5SRE7 291 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 REP15Q6BDI9 236 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 NANOGP8Q6NSW7 305 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 ZNF544Q6NX49 715 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 SLC22A25Q6T423 547 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 H1FNTQ75WM6 255 aaPredicted RBP6.82□□□□□ -1.32
CDH3-209ENST00000569080 CCDC80Q76M96 950 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 ABHD12BQ7Z5M8 362 aaPredicted RBP6.82□□□□□ -1.32
CDH3-209ENST00000569080 PATL1Q86TB9 770 aaKnown RBP6.82□□□□□ -1.32
CDH3-209ENST00000569080 MYPOPQ86VE0 399 aaPredicted RBP6.82□□□□□ -1.32
CDH3-209ENST00000569080 RANBP3LQ86VV4 465 aaPredicted RBP6.82□□□□□ -1.32
CDH3-209ENST00000569080 SLC30A8Q8IWU4 369 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 ANKK1Q8NFD2 765 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 OR8J3Q8NGG0 315 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 OR10A6Q8NH74 314 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 C10orf82Q8WW14 230 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 GTPBP3Q969Y2 492 aaKnown RBP6.82□□□□□ -1.32
CDH3-209ENST00000569080 OXGR1Q96P68 337 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 MCHR1Q99705 422 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 DHRS9Q9BPW9 319 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 NANOGQ9H9S0 305 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 CBLN4Q9NTU7 201 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 FAIMQ9NVQ4 179 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 MRPL39Q9NYK5 338 aaKnown RBP6.82□□□□□ -1.32
CDH3-209ENST00000569080 RPS6KB2Q9UBS0 482 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 CORINQ9Y5Q5 1042 aa6.82□□□□□ -1.32
CDH3-209ENST00000569080 HEATR1Q9H583 2144 aaKnown RBP6.82□□□□□ -1.32
CDH3-209ENST00000569080 JMJD1CQ15652 2540 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 CPSF4LA6NMK7 179 aaKnown RBP6.81□□□□□ -1.32
CDH3-209ENST00000569080 BBIP1A8MTZ0 92 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 H7C417 338 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 MRASO14807 208 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 CELA3BP08861 270 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 CECR9P0C854 216 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 TROVE2P10155 538 aaKnown RBP eCLIP6.81□□□□□ -1.32
CDH3-209ENST00000569080 CBLP22681 906 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 GTF2E2P29084 291 aaKnown RBP6.81□□□□□ -1.32
CDH3-209ENST00000569080 ARFIP2P53365 341 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 PRPS1P60891 318 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 TUBA1BP68363 451 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 TUBA4AP68366 448 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 GUCY1A3Q02108 690 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 POU3F1Q03052 451 aaPredicted RBP6.81□□□□□ -1.32
CDH3-209ENST00000569080 PUDPQ08623 228 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 SF3A3Q12874 501 aaKnown RBP eCLIP6.81□□□□□ -1.32
CDH3-209ENST00000569080 VEZF1Q14119 521 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 MFSD13AQ14CX5 517 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 ZNF74Q16587 644 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 CLEC12BQ2HXU8 276 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 MST1LQ2TV78 715 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 CEACAM16Q2WEN9 425 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 C3orf36Q3SXR2 165 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 ENTPD8Q5MY95 495 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 AGAP6Q5VW22 663 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 ANKRD16Q6P6B7 361 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 KLHL24Q6TFL4 600 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 TUBA1AQ71U36 451 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 ZNF627Q7L945 461 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 SLC46A3Q7Z3Q1 461 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 SNX32Q86XE0 403 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 C20orf196Q8IYI0 205 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 MUC15Q8N387 334 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 FAM169BQ8N8A8 192 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 MAPK1IP1LQ8NDC0 245 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 VANGL1Q8TAA9 524 aaPredicted RBP6.81□□□□□ -1.32
CDH3-209ENST00000569080 ADAMTS16Q8TE57 1224 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 LRRC58Q96CX6 371 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 TRMT61AQ96FX7 289 aaKnown RBP6.81□□□□□ -1.32
CDH3-209ENST00000569080 ZNF583Q96ND8 569 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 SLC38A2Q96QD8 506 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 EPYCQ99645 322 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 PRSS27Q9BQR3 290 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 KATNB1Q9BVA0 655 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 CACNG6Q9BXT2 260 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 ALG2Q9H553 416 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 TMEM27Q9HBJ8 222 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 NOX3Q9HBY0 568 aa6.81□□□□□ -1.32
CDH3-209ENST00000569080 GPR35Q9HC97 309 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms