RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 OR6C4Q8NGE1 309 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 ZDHHC1Q8WTX9 485 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 MS4A3Q96HJ5 214 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 OR2A5Q96R48 311 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 ZNF436Q9C0F3 470 aaPredicted RBP12.12□□□□□ -0.47
VPS4A-204ENST00000566354 SPRTNQ9H040 489 aaPredicted RBP12.12□□□□□ -0.47
VPS4A-204ENST00000566354 C20orf85Q9H1P6 137 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 POLE3Q9NRF9 147 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 CPNE7Q9UBL6 633 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 UBQLN2Q9UHD9 624 aa12.12□□□□□ -0.47
VPS4A-204ENST00000566354 PCDHGA9Q9Y5G4 932 aaKnown RBP12.12□□□□□ -0.47
VPS4A-204ENST00000566354 TRBV2A0A0J9YWF9 115 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 A0A1B0GTQ1 180 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 SYNDIG1LA6NDD5 238 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 ZNF879B4DU55 563 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 BRINP1O60477 761 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 DNAJB6O75190 326 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 OR7A10O76100 309 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 TGM6O95932 706 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 EXOSC2Q13868 293 aaKnown RBP12.11□□□□□ -0.47
VPS4A-204ENST00000566354 ZNF761Q86XN6 746 aaPredicted RBP12.11□□□□□ -0.47
VPS4A-204ENST00000566354 RFLNBQ8N5W9 214 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 LRRC20Q8TCA0 184 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 GRHL3Q8TE85 626 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 SNX33Q8WV41 574 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 ZMYND19Q96E35 227 aaPredicted RBP12.11□□□□□ -0.47
VPS4A-204ENST00000566354 CNN2Q99439 309 aaKnown RBP12.11□□□□□ -0.47
VPS4A-204ENST00000566354 ZNF426Q9BUY5 554 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 SRMSQ9H3Y6 488 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 PLEKHA1Q9HB21 404 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 MCCC2Q9HCC0 563 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 LYRM4Q9HD34 91 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 AK6Q9Y3D8 172 aaKnown RBP12.11□□□□□ -0.47
VPS4A-204ENST00000566354 NAP1L6A6NFF2 107 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 KHNYNO15037 678 aaKnown RBP12.11□□□□□ -0.47
VPS4A-204ENST00000566354 TMEM127O75204 238 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 TFP02787 698 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 MAP3K8P41279 467 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 HCCSP53701 268 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 EPHA4P54764 986 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 RAB14P61106 215 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 UBE2IP63279 158 aaKnown RBP12.11□□□□□ -0.47
VPS4A-204ENST00000566354 POU6F2P78424 691 aaPredicted RBP12.11□□□□□ -0.47
VPS4A-204ENST00000566354 ID2Q02363 134 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 FHL1Q13642 323 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 GGTLC2Q14390 218 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 POU4F3Q15319 338 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 ELOCQ15369 112 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 UNQ9370/PRO34162Q6UXP9 181 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 ABHD13Q7L211 337 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 CMTM4Q8IZR5 234 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 OR52E2Q8NGJ4 325 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 OR2T35Q8NGX2 323 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 LGALS14Q8TCE9 139 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 ERMAPQ96PL5 475 aaPredicted RBP12.11□□□□□ -0.47
VPS4A-204ENST00000566354 OR14A2Q96R54 314 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 FSCN3Q9NQT6 498 aa12.11□□□□□ -0.47
VPS4A-204ENST00000566354 A0A1B0GWA3 101 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 RPS10-NUDT3A0A1W2PQS6 291 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 I3L521 148 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 P2RX6O15547 441 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 GPRIN2O60269 458 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 MPC2O95563 127 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 HPXP02790 462 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 PSMB1P20618 241 aaKnown RBP12.1□□□□□ -0.47
VPS4A-204ENST00000566354 SSTR2P30874 369 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 LCN1P31025 176 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 GABRA3P34903 492 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 CCR9P51686 369 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 MAZP56270 477 aaKnown RBP12.1□□□□□ -0.47
VPS4A-204ENST00000566354 AP3S2P59780 193 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 ZP1P60852 638 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 HNRNPKP61978 463 aaKnown RBP eCLIP12.1□□□□□ -0.47
VPS4A-204ENST00000566354 PLAURQ03405 335 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 PUDPQ08623 228 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 ZSWIM7Q19AV6 140 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 DEFB133Q30KQ1 61 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 PXDC1Q5TGL8 231 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 SEZ6L2Q6UXD5 910 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 EID2Q8N6I1 236 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 OR11G2Q8NGC1 345 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 DOK4Q8TEW6 326 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 MRPL48Q96GC5 212 aaKnown RBP12.1□□□□□ -0.47
VPS4A-204ENST00000566354 AUNIPQ9H7T9 357 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 NANSQ9NR45 359 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 POT1Q9NUX5 634 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 FLRT3Q9NZU0 649 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 RPS6KB2Q9UBS0 482 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 CHRNA9Q9UGM1 479 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 PILRBQ9UKJ0 227 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 FBXO4Q9UKT5 387 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 ICAM5Q9UMF0 924 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 KIR2DS5A0A0G2JLQ3 304 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 A0A0G2JNG1 304 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 GXYLT2A0PJZ3 443 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 KIR2DS3K7RE56 304 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 MAGEB4O15481 346 aaPredicted RBP12.1□□□□□ -0.47
VPS4A-204ENST00000566354 TNFSF14O43557 240 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 LDB3O75112 727 aa12.1□□□□□ -0.47
VPS4A-204ENST00000566354 PIAS2O75928 621 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms