RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 AMBNQ9NP70 447 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 GRHPRQ9UBQ7 328 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 TPRKBQ9Y3C4 175 aa27.41■■□□□ 1.98
CTCF-203ENST00000566078 FAM183AA6NL82 134 aa27.4■■□□□ 1.98
CTCF-203ENST00000566078 ITGB2P05107 769 aa27.4■■□□□ 1.98
CTCF-203ENST00000566078 EEF1B2P24534 225 aaKnown RBP27.4■■□□□ 1.98
CTCF-203ENST00000566078 SDHAP31040 664 aa27.4■■□□□ 1.98
CTCF-203ENST00000566078 CDH15P55291 814 aa27.4■■□□□ 1.98
CTCF-203ENST00000566078 CSNK2BP67870 215 aa27.4■■□□□ 1.98
CTCF-203ENST00000566078 ZNF362Q5T0B9 420 aaPredicted RBP27.4■■□□□ 1.98
CTCF-203ENST00000566078 CPOQ8IVL8 374 aa27.4■■□□□ 1.98
CTCF-203ENST00000566078 ANKK1Q8NFD2 765 aa27.4■■□□□ 1.98
CTCF-203ENST00000566078 TSPAN14Q8NG11 270 aa27.4■■□□□ 1.98
CTCF-203ENST00000566078 LDAHQ9H6V9 325 aa27.4■■□□□ 1.98
CTCF-203ENST00000566078 PLCXD1Q9NUJ7 323 aa27.4■■□□□ 1.98
CTCF-203ENST00000566078 SCOCQ9UIL1 159 aa27.4■■□□□ 1.98
CTCF-203ENST00000566078 TP53TG5Q9Y2B4 290 aa27.4■■□□□ 1.98
CTCF-203ENST00000566078 CACNA1GO43497 2377 aa27.39■■□□□ 1.98
CTCF-203ENST00000566078 A0A1W2PNV4 684 aa27.39■■□□□ 1.98
CTCF-203ENST00000566078 TRIM64A6NGJ6 449 aa27.39■■□□□ 1.98
CTCF-203ENST00000566078 KDM4EB2RXH2 506 aaPredicted RBP27.39■■□□□ 1.98
CTCF-203ENST00000566078 IMPA2O14732 288 aa27.39■■□□□ 1.98
CTCF-203ENST00000566078 SMIM18P0DKX4 95 aa27.39■■□□□ 1.98
CTCF-203ENST00000566078 SUCLG1P53597 346 aaKnown RBP27.39■■□□□ 1.98
CTCF-203ENST00000566078 CRMP1Q14194 572 aa27.39■■□□□ 1.98
CTCF-203ENST00000566078 HBMQ6B0K9 141 aa27.39■■□□□ 1.98
CTCF-203ENST00000566078 PLBD1Q6P4A8 553 aa27.39■■□□□ 1.98
CTCF-203ENST00000566078 PAQR6Q6TCH4 344 aa27.39■■□□□ 1.98
CTCF-203ENST00000566078 SLC37A3Q8NCC5 494 aa27.39■■□□□ 1.98
CTCF-203ENST00000566078 ZNF540Q8NDQ6 660 aa27.39■■□□□ 1.98
CTCF-203ENST00000566078 OR2V1Q8NHB1 315 aa27.39■■□□□ 1.98
CTCF-203ENST00000566078 PAK1IP1Q9NWT1 392 aaPredicted RBP27.39■■□□□ 1.98
CTCF-203ENST00000566078 ZNF346Q9UL40 294 aaKnown RBP27.39■■□□□ 1.98
CTCF-203ENST00000566078 AQP7P3A6NL99 342 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 ZNF814B7Z6K7 855 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 PTGES3LE9PB15 166 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 TXNDC12O95881 172 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 HLA-DOBP13765 273 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 LHX2P50458 406 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 P2RY4P51582 365 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 GPR139Q6DWJ6 353 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 TMEM154Q6P9G4 183 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 CYB561A3Q8NBI2 242 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 BBS1Q8NFJ9 593 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 SGCDQ92629 289 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 ADGRG7Q96K78 797 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 SRXN1Q9BYN0 137 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 EXO5Q9H790 373 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 MED20Q9H944 212 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 A0A1W2PRG6 482 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 PRR23D1E9PI22 279 aaPredicted RBP27.38■■□□□ 1.97
CTCF-203ENST00000566078 IGHMP01871 453 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 PRR23D2P0DMB1 279 aaPredicted RBP27.38■■□□□ 1.97
CTCF-203ENST00000566078 KLK2P20151 261 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 ITGADQ13349 1161 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 KRR1Q13601 381 aaKnown RBP27.38■■□□□ 1.97
CTCF-203ENST00000566078 ACKR1Q16570 336 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 EMC4Q5J8M3 183 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 AADACL4Q5VUY2 407 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 JAZF1Q86VZ6 243 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 ABTB1Q969K4 478 aaPredicted RBP27.38■■□□□ 1.97
CTCF-203ENST00000566078 TXNIPQ9H3M7 391 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 FANCFQ9NPI8 374 aa27.38■■□□□ 1.97
CTCF-203ENST00000566078 TRGV5A0A0B4J1U4 118 aa27.37■■□□□ 1.97
CTCF-203ENST00000566078 PRODHO43272 600 aa27.37■■□□□ 1.97
CTCF-203ENST00000566078 EIF1BO60739 113 aaKnown RBP27.37■■□□□ 1.97
CTCF-203ENST00000566078 PAICSP22234 425 aaKnown RBP27.37■■□□□ 1.97
CTCF-203ENST00000566078 ACVR2AP27037 513 aa27.37■■□□□ 1.97
CTCF-203ENST00000566078 POU3F1Q03052 451 aaPredicted RBP27.37■■□□□ 1.97
CTCF-203ENST00000566078 ZNF239Q16600 458 aaKnown RBP27.37■■□□□ 1.97
CTCF-203ENST00000566078 MESTQ5EB52 335 aa27.37■■□□□ 1.97
CTCF-203ENST00000566078 NXNL2Q5VZ03 156 aa27.37■■□□□ 1.97
CTCF-203ENST00000566078 NEIL3Q8TAT5 605 aa27.37■■□□□ 1.97
CTCF-203ENST00000566078 ZHX1-C8orf76Q96EF9 292 aa27.37■■□□□ 1.97
CTCF-203ENST00000566078 NAA11Q9BSU3 229 aaPredicted RBP27.37■■□□□ 1.97
CTCF-203ENST00000566078 TSPAN10Q9H1Z9 355 aaPredicted RBP27.37■■□□□ 1.97
CTCF-203ENST00000566078 PSORS1C1Q9UIG5 152 aa27.37■■□□□ 1.97
CTCF-203ENST00000566078 DNPH1O43598 174 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 ATP6V1B1P15313 513 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 CLDN15P56746 228 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 CLDN18P56856 261 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 CARD18P57730 90 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 RAC3P60763 192 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 RPL27P61353 136 aaKnown RBP27.36■■□□□ 1.97
CTCF-203ENST00000566078 MELKQ14680 651 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 PDSS1Q5T2R2 415 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 AHSA2Q719I0 299 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 PXKQ7Z7A4 578 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 GHDCQ8N2G8 530 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 OR10D3Q8NH80 312 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 NMNAT3Q96T66 252 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 HCAR1Q9BXC0 346 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 B3GAT1Q9P2W7 334 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 B3GNT3Q9Y2A9 372 aa27.36■■□□□ 1.97
CTCF-203ENST00000566078 IGHV3-15A0A0B4J1V0 119 aa27.35■■□□□ 1.97
CTCF-203ENST00000566078 CXCL13O43927 109 aa27.35■■□□□ 1.97
CTCF-203ENST00000566078 ZNF708P17019 499 aa27.35■■□□□ 1.97
CTCF-203ENST00000566078 EIF1AXP47813 144 aaKnown RBP27.35■■□□□ 1.97
CTCF-203ENST00000566078 CDH11P55287 796 aa27.35■■□□□ 1.97
CTCF-203ENST00000566078 SLC35A2P78381 396 aa27.35■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms