RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SLC25A37Q9NYZ2 338 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 FBXO9Q9UK97 447 aaPredicted RBP14.86□□□□□ -0.03
CLN3-216ENST00000565316 USH1CQ9Y6N9 552 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 MALRD1Q5VYJ5 2156 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 NBEAL1Q6ZS30 2694 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 TRAV36DV7A0A075B6V5 113 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 A0A1B0GWA3 101 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 C5orf58C9J3I9 102 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 M0R082 166 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 ARAFP10398 606 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 GTF2E2P29084 291 aaKnown RBP14.85□□□□□ -0.03
CLN3-216ENST00000565316 GGTLC2Q14390 218 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 BLOC1S3Q6QNY0 202 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 H1FNTQ75WM6 255 aaPredicted RBP14.85□□□□□ -0.03
CLN3-216ENST00000565316 FUNDC1Q8IVP5 155 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 CCDC36Q8IYA8 594 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 TMEM123Q8N131 208 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 ANKS4BQ8N8V4 417 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 OR6S1Q8NH40 331 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 ZNF417Q8TAU3 575 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 DNAJA4Q8WW22 397 aaPredicted RBP14.85□□□□□ -0.03
CLN3-216ENST00000565316 SLC38A4Q969I6 547 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 MSI2Q96DH6 328 aaKnown RBP14.85□□□□□ -0.03
CLN3-216ENST00000565316 ZNF837Q96EG3 531 aaPredicted RBP14.85□□□□□ -0.03
CLN3-216ENST00000565316 OR2M2Q96R28 347 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 ZNF587Q96SQ5 575 aaPredicted RBP14.85□□□□□ -0.03
CLN3-216ENST00000565316 VRK1Q99986 396 aaPredicted RBP14.85□□□□□ -0.03
CLN3-216ENST00000565316 SHARPINQ9H0F6 387 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 TMBIM4Q9HC24 238 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 SLC52A3Q9NQ40 469 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 RPS6KB2Q9UBS0 482 aa14.85□□□□□ -0.03
CLN3-216ENST00000565316 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.84□□□□□ -0.037e-9■■□□□ 13.5
CLN3-216ENST00000565316 IGHV4-61A0A0C4DH41 118 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 TRAF3IP2O43734 574 aaPredicted RBP14.84□□□□□ -0.03
CLN3-216ENST00000565316 TGDSO95455 350 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 CELA3BP08861 270 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 IGFBP5P24593 272 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 GRPRP30550 384 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 IDH3GP51553 393 aaPredicted RBP14.84□□□□□ -0.03
CLN3-216ENST00000565316 C1DQ13901 141 aaKnown RBP14.84□□□□□ -0.03
CLN3-216ENST00000565316 FAM91A1Q658Y4 838 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 REEP3Q6NUK4 255 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 NHLRC1Q6VVB1 395 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 MYPOPQ86VE0 399 aaPredicted RBP14.84□□□□□ -0.03
CLN3-216ENST00000565316 C10orf111Q8N326 155 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 GPR137CQ8N3F9 429 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 ARIH2OSQ8N7S6 290 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 ZNF540Q8NDQ6 660 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 PIK3C3Q8NEB9 887 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 NFKBIDQ8NI38 313 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 SLC41A3Q96GZ6 507 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 DOK1Q99704 481 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 CRLF2Q9HC73 371 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 SLAMF8Q9P0V8 285 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 KLHL14Q9P2G3 628 aa14.84□□□□□ -0.03
CLN3-216ENST00000565316 TRBV5-3A0A0A0MS03 114 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 IGHV2OR16-5A0A0B4J2B6 119 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 LOC100289279A0A1B0GTE1 492 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 SLC35F4A4IF30 521 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 ZNF503-AS2A6NEH8 195 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 MS4A18H0YCH9 400 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 TPST1O60507 370 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 PPIBP23284 216 aaKnown RBP14.83□□□□□ -0.04
CLN3-216ENST00000565316 GIFP27352 417 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 THBS4P35443 961 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 ARR3P36575 388 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 CDK6Q00534 326 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 MFSD13AQ14CX5 517 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 CEACAM16Q2WEN9 425 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 MS4A18Q3C1V0 323 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 GCNT6Q5T4J0 391 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 FAM166AQ6J272 317 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 ULK3Q6PHR2 472 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 VHLLQ6RSH7 139 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 IL17RDQ8NFM7 739 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 C7orf26Q96N11 449 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 SPATA5L1Q9BVQ7 753 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 RAB1BQ9H0U4 201 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 TCF7L2Q9NQB0 619 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 B3GNT2Q9NY97 397 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 KCNS2Q9ULS6 477 aa14.83□□□□□ -0.04
CLN3-216ENST00000565316 TMEM129A0AVI4 362 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 ZNF99A8MXY4 864 aaPredicted RBP14.82□□□□□ -0.04
CLN3-216ENST00000565316 AKAP8O43823 692 aaKnown RBP14.82□□□□□ -0.04
CLN3-216ENST00000565316 HPRP00739 348 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 APEHP13798 732 aaKnown RBP14.82□□□□□ -0.04
CLN3-216ENST00000565316 ZNF23P17027 643 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 NPR2P20594 1047 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 STX1BP61266 288 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 GLIPR1L2Q4G1C9 344 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 ALG10BQ5I7T1 473 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 MDP1Q86V88 176 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 KRT73Q86Y46 540 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 C20orf196Q8IYI0 205 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 SCAIQ8N9R8 606 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 SPDL1Q96EA4 605 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 SLC47A1Q96FL8 570 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 LRR1Q96L50 414 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 TMEM38AQ9H6F2 299 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 VAPAQ9P0L0 249 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms