RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 SLC22A2O15244 555 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 ZNF432O94892 652 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 LYPD3O95274 346 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 WNT11O96014 354 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 THY1P04216 161 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 HLA-DOBP13765 273 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 CDKN1AP38936 164 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 RIPPLY3P57055 190 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 ROR2Q01974 943 aaKnown RBP13.71□□□□□ -0.21
VPS39-203ENST00000561797 VEZF1Q14119 521 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 TBRG1Q3YBR2 411 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 CARD17Q5XLA6 110 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 TTC33Q6PID6 262 aaPredicted RBP13.71□□□□□ -0.21
VPS39-203ENST00000561797 PRSS57Q6UWY2 283 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 TSPYL5Q86VY4 417 aaPredicted RBP13.71□□□□□ -0.21
VPS39-203ENST00000561797 CARM1Q86X55 608 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 DEPDC4Q8N2C3 294 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 GPR137CQ8N3F9 429 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 ADPRHL1Q8NDY3 354 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 GTPBP3Q969Y2 492 aaKnown RBP13.71□□□□□ -0.21
VPS39-203ENST00000561797 SLC41A3Q96GZ6 507 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 RADILQ96JH8 1075 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 SMR3AQ99954 134 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 ELAC2Q9BQ52 826 aaKnown RBP13.71□□□□□ -0.21
VPS39-203ENST00000561797 ZNF701Q9NV72 531 aaPredicted RBP13.71□□□□□ -0.21
VPS39-203ENST00000561797 RCE1Q9Y256 329 aa13.71□□□□□ -0.21
VPS39-203ENST00000561797 PLCE1Q9P212 2302 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 A0A096LPE4 126 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 LOC102725191A0A1B0GVB3 256 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 A0A1W2PPZ6 126 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 FAM220BPB1ANY3 271 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 E7EQL1 145 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 C11orf98E9PRG8 122 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 H7C1Q1 480 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 OVOL3O00110 214 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 KPNA4O00629 521 aaPredicted RBP13.7□□□□□ -0.22
VPS39-203ENST00000561797 TRAF3IP2O43734 574 aaPredicted RBP13.7□□□□□ -0.22
VPS39-203ENST00000561797 AKAP8O43823 692 aaKnown RBP13.7□□□□□ -0.22
VPS39-203ENST00000561797 CCDC22O60826 627 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 SHOX2O60902 331 aaPredicted RBP13.7□□□□□ -0.22
VPS39-203ENST00000561797 TMCC2O75069 709 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 SERPINI2O75830 405 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 CH25HO95992 272 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 INHBBP09529 407 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 COX4I1P13073 169 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 PAX1P15863 534 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 AHCYP23526 432 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 TUBA1BP68363 451 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 TUBA4AP68366 448 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 POU3F1Q03052 451 aaPredicted RBP13.7□□□□□ -0.22
VPS39-203ENST00000561797 LRRC23Q53EV4 343 aaPredicted RBP13.7□□□□□ -0.22
VPS39-203ENST00000561797 TUBA1AQ71U36 451 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 CIARTQ8N365 385 aaPredicted RBP13.7□□□□□ -0.22
VPS39-203ENST00000561797 SCAIQ8N9R8 606 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 OR2T12Q8NG77 320 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 RP9Q8TA86 221 aaKnown RBP13.7□□□□□ -0.22
VPS39-203ENST00000561797 BCL2L2Q92843 193 aaPredicted RBP13.7□□□□□ -0.22
VPS39-203ENST00000561797 TRMT61AQ96FX7 289 aaKnown RBP13.7□□□□□ -0.22
VPS39-203ENST00000561797 TXNDC15Q96J42 360 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 OR2M2Q96R28 347 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 EMC6Q9BV81 110 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 ALG2Q9H553 416 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 GPR35Q9HC97 309 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 MED29Q9NX70 200 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 MRPL39Q9NYK5 338 aaKnown RBP13.7□□□□□ -0.22
VPS39-203ENST00000561797 BAG5Q9UL15 447 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 ATP23Q9Y6H3 246 aa13.7□□□□□ -0.22
VPS39-203ENST00000561797 TRIM64A6NGJ6 449 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 TRIM64BA6NI03 449 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 M0R3G1 203 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 PLPP3O14495 311 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 SMAD7O15105 426 aaKnown RBP13.69□□□□□ -0.22
VPS39-203ENST00000561797 OR6A2O95222 327 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 IFNA14P01570 189 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 CD8AP01732 235 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 ADORA3P0DMS8 318 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 OR1E2P47887 323 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 SEC24CP53992 1094 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 UBE2NP61088 152 aaKnown RBP13.69□□□□□ -0.22
VPS39-203ENST00000561797 ARF1P84077 181 aaKnown RBP13.69□□□□□ -0.22
VPS39-203ENST00000561797 PUDPQ08623 228 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 CEACAM16Q2WEN9 425 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 PHYHD1Q5SRE7 291 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 ANKRD16Q6P6B7 361 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 B3GLCTQ6Y288 498 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 DEF8Q6ZN54 512 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 MICU2Q8IYU8 434 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 PIK3C3Q8NEB9 887 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 OR5J2Q8NH18 312 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 TPD52L3Q96J77 140 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 BDH2Q9BUT1 245 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 TRAF4Q9BUZ4 470 aaPredicted RBP13.69□□□□□ -0.22
VPS39-203ENST00000561797 CRLF2Q9HC73 371 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 FAIMQ9NVQ4 179 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 CMTM6Q9NX76 183 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 GMPR2Q9P2T1 348 aaKnown RBP13.69□□□□□ -0.22
VPS39-203ENST00000561797 NOX1Q9Y5S8 564 aa13.69□□□□□ -0.22
VPS39-203ENST00000561797 ELOVL7A1L3X0 281 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 SLC35F4A4IF30 521 aa13.68□□□□□ -0.22
VPS39-203ENST00000561797 MT-ATP6P00846 226 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms