RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SLCO1A2P46721 670 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 TUFMP49411 452 aaKnown RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 BLVRAP53004 296 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 BAMBIQ13145 260 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 RPA4Q13156 261 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 KRR1Q13601 381 aaKnown RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 TRIP10Q15642 601 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 LPCAT4Q643R3 524 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 ANKRD26P1Q6NSI1 321 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 CCDC137Q6PK04 289 aaKnown RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 ZFP2Q6ZN57 461 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 ZNF571Q7Z3V5 609 aaPredicted RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 HDDC2Q7Z4H3 204 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 PPP1R27Q86WC6 154 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 SIAH3Q8IW03 269 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 SLC38A6Q8IZM9 456 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 PYROXD2Q8N2H3 581 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 PACRGLQ8N7B6 248 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 UBL4BQ8N7F7 174 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 PRELID2Q8N945 189 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 ASCC1Q8N9N2 400 aaKnown RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 OR8H1Q8NGG4 311 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 OR10Z1Q8NGY1 313 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 LHFPL5Q8TAF8 219 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 BRSK1Q8TDC3 778 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 BLOC1S5Q8TDH9 187 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 KRT35Q92764 455 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 C12orf43Q96C57 262 aaKnown RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 AP2M1Q96CW1 435 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 CMTM5Q96DZ9 223 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 DNAJA3Q96EY1 480 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 DUS3LQ96G46 650 aaKnown RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 TMEM101Q96IK0 257 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 BTN2A3PQ96KV6 586 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 TSG101Q99816 390 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 THTPAQ9BU02 230 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 CHRDL1Q9BU40 450 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 ANKRD60Q9BZ19 345 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 GCOM2Q9BZD3 368 aaPredicted RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 NMNAT2Q9BZQ4 307 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 ABCG8Q9H221 673 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 GOLPH3Q9H4A6 298 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 NXF3Q9H4D5 531 aaKnown RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 TRABDQ9H4I3 376 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 ARMC7Q9H6L4 198 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 RPF2Q9H7B2 306 aaKnown RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 SIAEQ9HAT2 523 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 UGT1A7Q9HAW7 530 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 UGT1A10Q9HAW8 530 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 UGT1A8Q9HAW9 530 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 FANCEQ9HB96 536 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 ANKHQ9HCJ1 492 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 APMAPQ9HDC9 416 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 HMG20AQ9NP66 347 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 SLCO1B3Q9NPD5 702 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 C12orf4Q9NQ89 552 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 C8orf4Q9NR00 106 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 PNPLA3Q9NST1 481 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 GDAP2Q9NXN4 497 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 NINJ2Q9NZG7 142 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 TMOD2Q9NZR1 351 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 HMGXB4Q9UGU5 601 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 PRPF19Q9UMS4 504 aaKnown RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 PACSIN2Q9UNF0 486 aaPredicted RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 SCML2Q9UQR0 700 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 EIF3LQ9Y262 564 aaKnown RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 UGT2A1Q9Y4X1 527 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 MYO3BQ8WXR4 1341 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 FLT4P35916 1363 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 COL22A1Q8NFW1 1626 aaPredicted RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 C3P01024 1663 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 MYO5BQ9ULV0 1848 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 TRBV7-9A0A0J9YWB2 115 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 ZSCAN5BA6NJL1 495 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 FAM25AB3EWG3 89 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 FAM25CB3EWG5 89 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 FAM25GB3EWG6 89 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 CLDN25C9JDP6 229 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 H3BMQ9 156 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 TXNDC9O14530 226 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 SLC9A3R1O14745 358 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 YKT6O15498 198 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 ZW10O43264 779 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 KLHL41O60662 606 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 TOM1O60784 492 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 NME6O75414 186 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 B3GALNT1O75752 331 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 CDK14O94921 469 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 OLFM2O95897 454 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 MT-ND3P03897 115 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 RPS17P08708 135 aaKnown RBP2.34□□□□□ -2.03
VPS13C-208ENST00000559119 TFPTP0C1Z6 253 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 TRAPPC2P0DI81 140 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 TRAPPC2BP0DI82 140 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 UROSP10746 265 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 MCF2P10911 925 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 SDC1P18827 310 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 CTNNB1P35222 781 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 RCVRNP35243 200 aa2.34□□□□□ -2.03
VPS13C-208ENST00000559119 RPA3P35244 121 aaPredicted RBP2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms