RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 RTN4RQ9BZR6 473 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 VN1R1Q9GZP7 353 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 ZNF350Q9GZX5 532 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 ANKRD19PQ9H560 264 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 ZNF556Q9HAH1 456 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 FOLH1BQ9HBA9 442 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 EQTNQ9NQ60 294 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 SDHAF3Q9NRP4 125 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 UBQLN4Q9NRR5 601 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 AGPAT4Q9NRZ5 378 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 DCAF16Q9NXF7 216 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 GAR1Q9NY12 217 aaKnown RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 PISDQ9UG56 409 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 RAB26Q9ULW5 256 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 ERVK-19Q9WJR5 959 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 FARSAQ9Y285 508 aaKnown RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 SLC35A3Q9Y2D2 325 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 SH3GLB1Q9Y371 365 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 ENPP4Q9Y6X5 453 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 PIKFYVEQ9Y2I7 2098 aa4.66□□□□□ -1.66
LDLR-209ENST00000558528 SPENQ96T58 3664 aaKnown RBP4.66□□□□□ -1.66
LDLR-209ENST00000558528 PCNX1Q96RV3 2341 aa4.65□□□□□ -1.66
LDLR-209ENST00000558528 STMND1H3BQB6 276 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 TNFRSF11BO00300 401 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 OGG1O15527 345 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 KCNK2O95069 426 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 ZFPL1O95159 310 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 OXSR1O95747 527 aaPredicted RBP4.65□□□□□ -1.67
LDLR-209ENST00000558528 HPRP00739 348 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 IGKV3-11P04433 115 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 NGFRP08138 427 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 ELANEP08246 267 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 CT62P0C5K7 136 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 ACP2P11117 423 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 CCL4P13236 92 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 MMP9P14780 707 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 ZNF23P17027 643 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 TCN2P20062 427 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 AGAP20933 346 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 MMP11P24347 488 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 EEF1B2P24534 225 aaKnown RBP4.65□□□□□ -1.67
LDLR-209ENST00000558528 IL12BP29460 328 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 AQP1P29972 269 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 GSK3AP49840 483 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 DIO1P49895 249 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 HMGA2P52926 109 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 KCNJ10P78508 379 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 PSG6Q00889 435 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 CFHR3Q02985 330 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 C17orf67Q0P5P2 114 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 MED21Q13503 144 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 DUSP5Q16690 384 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 SFT2D3Q587I9 215 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 CMPK2Q5EBM0 449 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 PRAMEF17Q5VTA0 474 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 TTC23Q5W5X9 447 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 PAPD4Q6PIY7 484 aaKnown RBP4.65□□□□□ -1.67
LDLR-209ENST00000558528 DHRS13Q6UX07 377 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 MOB3CQ70IA8 216 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 COX15Q7KZN9 410 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 NDUFAF7Q7L592 441 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 ANKRD37Q7Z713 158 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 CENPVQ7Z7K6 275 aaPredicted RBP4.65□□□□□ -1.67
LDLR-209ENST00000558528 RANBP3LQ86VV4 465 aaPredicted RBP4.65□□□□□ -1.67
LDLR-209ENST00000558528 RAB43Q86YS6 212 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 KLBQ86Z14 1044 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 GRAMD2AQ8IUY3 354 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 SLC34A3Q8N130 599 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 CLEC4FQ8N1N0 589 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 ZNF555Q8NEP9 628 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 OR5D16Q8NGK9 328 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 OR2Y1Q8NGV0 311 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 C16orf52Q8NHV5 167 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 C9orf43Q8TAL5 461 aaPredicted RBP4.65□□□□□ -1.67
LDLR-209ENST00000558528 SLC22A8Q8TCC7 542 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 ZNF721Q8TF20 911 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 WIPF2Q8TF74 440 aaPredicted RBP4.65□□□□□ -1.67
LDLR-209ENST00000558528 PHF10Q8WUB8 498 aaKnown RBP4.65□□□□□ -1.67
LDLR-209ENST00000558528 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.65□□□□□ -1.67
LDLR-209ENST00000558528 ADAMTS14Q8WXS8 1223 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 CDS1Q92903 461 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 SLC38A4Q969I6 547 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 KIAA1143Q96AT1 154 aaPredicted RBP4.65□□□□□ -1.67
LDLR-209ENST00000558528 TAMM41Q96BW9 452 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 WBP1Q96G27 269 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 C16orf58Q96GQ5 468 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 VSTM2LQ96N03 204 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 ZNF300Q96RE9 604 aaPredicted RBP4.65□□□□□ -1.67
LDLR-209ENST00000558528 CCNL2Q96S94 520 aaPredicted RBP4.65□□□□□ -1.67
LDLR-209ENST00000558528 DIRC2Q96SL1 478 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 MNTQ99583 582 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 EPYCQ99645 322 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 ZNF184Q99676 751 aaPredicted RBP4.65□□□□□ -1.67
LDLR-209ENST00000558528 ABHD14AQ9BUJ0 271 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 FNDC11Q9BVV2 318 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 SEMA4CQ9C0C4 833 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 OR8D2Q9GZM6 311 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 SLC38A1Q9H2H9 487 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 TMEM27Q9HBJ8 222 aa4.65□□□□□ -1.67
LDLR-209ENST00000558528 APMAPQ9HDC9 416 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms