RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 RRAS2P62070 204 aaPredicted RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 ERVK-25P63136 954 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 IFITM2Q01629 132 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 MAB21L1Q13394 359 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 TDGQ13569 410 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 FAM27D1Q5T7N8 215 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 HLA-DQA1Q5Y7H0 255 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 RPTNQ6XPR3 784 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 FAM122BQ7Z309 247 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 PLXDC1Q8IUK5 500 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 TMEM151BQ8IW70 566 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 EID2Q8N6I1 236 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 FRMD1Q8N878 549 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 LSM14AQ8ND56 463 aaKnown RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 NLGN4YQ8NFZ3 816 aaPredicted RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 OR2T4Q8NH00 348 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 ZNF671Q8TAW3 534 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 C15orf40Q8WUR7 153 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 UPRTQ96BW1 309 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 RASD2Q96D21 266 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 RNF31Q96EP0 1072 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 GAS2L1Q99501 681 aaPredicted RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 CRB3Q9BUF7 120 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 ALG12Q9BV10 488 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 YIPF2Q9BWQ6 316 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 PHF7Q9BWX1 381 aaPredicted RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 TPSD1Q9BZJ3 242 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 ABCG5Q9H222 651 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 MARCH7Q9H992 704 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 LMAN1LQ9HAT1 526 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 RANGRFQ9HD47 186 aaPredicted RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 MMP25Q9NPA2 562 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 BRD7Q9NPI1 651 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 ZNF275Q9NSD4 429 aaPredicted RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 ACOXLQ9NUZ1 547 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 MRPL39Q9NYK5 338 aaKnown RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 COPS7AQ9UBW8 275 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 ZNF281Q9Y2X9 895 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 ADAM18Q9Y3Q7 739 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 TMEM14AQ9Y6G1 99 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 IGKV3D-11A0A0A0MRZ8 115 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 OR6C68A6NDL8 312 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 A8MU76 341 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 CENPBD1B2RD01 187 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 BLOC1S5-TXNDC5H3BN57 136 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 DVL2O14641 736 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 TO15178 435 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 EEF1E1O43324 174 aaKnown RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 MBTPS2O43462 519 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 TPPPO94811 219 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 MT-ATP6P00846 226 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 C1QBP02746 253 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 ASAH2BP0C7U1 165 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 PGCP20142 388 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 UQCRC1P31930 480 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 BLVRAP53004 296 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 RAG2P55895 527 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 SCAND1P57086 179 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 NXPH1P58417 271 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 AP3S2P59780 193 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 CTXN1P60606 82 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 HSD11B2P80365 405 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 MRPS10P82664 201 aaKnown RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 CD83Q01151 205 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 MADCAM1Q13477 382 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 GPR176Q14439 515 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 ANGPT1Q15389 498 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 SF3B4Q15427 424 aaKnown RBP eCLIP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 CD226Q15762 336 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 NTRK2Q16620 822 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 SLC25A35Q3KQZ1 300 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 PLA1AQ53H76 456 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 LINC01590Q5TEZ4 76 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 SLC22A10Q63ZE4 541 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 C5orf46Q6UWT4 87 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 IL20RBQ6UXL0 311 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 SLC29A4Q7RTT9 530 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 KMT5CQ86Y97 462 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 PLCZ1Q86YW0 608 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 GPR135Q8IZ08 494 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 TDHQ8IZJ6 230 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 UBE2J2Q8N2K1 259 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 TOMM5Q8N4H5 51 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 METTL27Q8N6F8 245 aaPredicted RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 LRRC17Q8N6Y2 441 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 LRRC75AQ8NAA5 344 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 ZSCAN1Q8NBB4 408 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 PTPMT1Q8WUK0 201 aaPredicted RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 ARSGQ96EG1 525 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 RNF170Q96K19 258 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 GTPBP2Q9BX10 602 aaKnown RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 SPRTNQ9H040 489 aaPredicted RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 NXF5Q9H1B4 397 aaKnown RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 PPIL3Q9H2H8 161 aaKnown RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 STMN3Q9NZ72 180 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 PTTG3PQ9NZH4 202 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 EMC3Q9P0I2 261 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 GRHPRQ9UBQ7 328 aa6.62□□□□□ -1.35
VPS13C-206ENST00000558338 RBMX2Q9Y388 322 aaKnown RBP6.62□□□□□ -1.35
VPS13C-206ENST00000558338 TRAV36DV7A0A075B6V5 113 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms