RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 ROM1Q03395 351 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 SLC17A1Q14916 467 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 ADRM1Q16186 407 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 PDLIM3Q53GG5 364 aaPredicted RBP8.72□□□□□ -1.01
SCFD1-220ENST00000556486 PAQR6Q6TCH4 344 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 CLEC4FQ8N1N0 589 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 UBE2J2Q8N2K1 259 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 WDR31Q8NA23 367 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 OR4A15Q8NGL6 344 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 XAGE5Q8WWM1 108 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 TMEM45BQ96B21 275 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 FBXO17Q96EF6 278 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 CCDC115Q96NT0 180 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 SORCS2Q96PQ0 1159 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 TRNT1Q96Q11 434 aaKnown RBP8.72□□□□□ -1.01
SCFD1-220ENST00000556486 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.72□□□□□ -1.01
SCFD1-220ENST00000556486 FBXO9Q9UK97 447 aaPredicted RBP8.72□□□□□ -1.01
SCFD1-220ENST00000556486 AMDHD2Q9Y303 409 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 FLVCR1Q9Y5Y0 555 aa8.72□□□□□ -1.01
SCFD1-220ENST00000556486 ARFGEF3Q5TH69 2177 aa8.71□□□□□ -1.01
SCFD1-220ENST00000556486 HMGN4O00479 90 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 BIRC5O15392 142 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 SERPINE1P05121 402 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 MYZAPP0CAP1 466 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 TFPIP10646 304 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 CREB1P16220 341 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 TNFSF4P23510 183 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 SLC1A3P43003 542 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 KHKP50053 298 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 PDLIM4P50479 330 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 POLR2HP52434 150 aaKnown RBP8.71□□□□□ -1.02
SCFD1-220ENST00000556486 CLNS1AP54105 237 aaKnown RBP8.71□□□□□ -1.02
SCFD1-220ENST00000556486 FOXG1P55316 489 aaPredicted RBP8.71□□□□□ -1.02
SCFD1-220ENST00000556486 SLC35A1P78382 337 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 DEFA6Q01524 100 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 OGFOD2Q6N063 350 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 TNFAIP8L2Q6P589 184 aaPredicted RBP8.71□□□□□ -1.02
SCFD1-220ENST00000556486 OLIG3Q7RTU3 272 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 ARFGAP2Q8N6H7 521 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 ZNF563Q8TA94 476 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 RAB8BQ92930 207 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 GCDHQ92947 438 aaPredicted RBP8.71□□□□□ -1.02
SCFD1-220ENST00000556486 ZNF317Q96PQ6 595 aaPredicted RBP8.71□□□□□ -1.02
SCFD1-220ENST00000556486 SF3B5Q9BWJ5 86 aaKnown RBP8.71□□□□□ -1.02
SCFD1-220ENST00000556486 DPY30Q9C005 99 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 OR11A1Q9GZK7 315 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 BPESC1Q9GZL8 116 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 SLC38A1Q9H2H9 487 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 FKRPQ9H9S5 495 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 OBP2BQ9NPH6 170 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 SLC17A5Q9NRA2 495 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 SLC7A10Q9NS82 523 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 BTNL2Q9UIR0 455 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 OSGIN1Q9UJX0 560 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 RAP2CQ9Y3L5 183 aa8.71□□□□□ -1.02
SCFD1-220ENST00000556486 HEATR1Q9H583 2144 aaKnown RBP8.71□□□□□ -1.02
SCFD1-220ENST00000556486 TMED7-TICAM2A0A0A6YYA0 188 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 CCT8L1PA6NM43 557 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 CLDN24A6NM45 220 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 E9PBE3 544 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 NDUFS8O00217 210 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 ITM2AO43736 263 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 CELA3BP08861 270 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 FAHP16930 419 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 MPGP29372 298 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 APOBEC3AP31941 199 aaPredicted RBP8.7□□□□□ -1.02
SCFD1-220ENST00000556486 RYKP34925 604 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 IDH2P48735 452 aaKnown RBP8.7□□□□□ -1.02
SCFD1-220ENST00000556486 HPCAP84074 193 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 SLC25A3Q00325 362 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 CHRNB3Q05901 458 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 LRRC74AQ0VAA2 488 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 KIR3DS1Q14943 382 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 GSTA3Q16772 222 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 SPANXN4Q5MJ08 99 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 TSPO2Q5TGU0 170 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 C9orf135Q5VTT2 229 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 CASP12Q6UXS9 341 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 LRRC74BQ6ZQY2 392 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 ANKRD46Q86W74 232 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 NUDCD3Q8IVD9 361 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 ZNF781Q8N8C0 355 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 ZIC4Q8N9L1 334 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 POMGNT2Q8NAT1 580 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 SEMA6DQ8NFY4 1073 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 OR52E4Q8NGH9 312 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 SGMS2Q8NHU3 365 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 AENQ8WTP8 325 aaKnown RBP8.7□□□□□ -1.02
SCFD1-220ENST00000556486 CNOT9Q92600 299 aaKnown RBP8.7□□□□□ -1.02
SCFD1-220ENST00000556486 DDIT4LQ96D03 193 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 DNAJA3Q96EY1 480 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 VRK1Q99986 396 aaPredicted RBP8.7□□□□□ -1.02
SCFD1-220ENST00000556486 SLC35A5Q9BS91 424 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 NAA11Q9BSU3 229 aaPredicted RBP8.7□□□□□ -1.02
SCFD1-220ENST00000556486 C20orf27Q9GZN8 174 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 METTL17Q9H7H0 456 aaPredicted RBP8.7□□□□□ -1.02
SCFD1-220ENST00000556486 MTHFD2LQ9H903 347 aaPredicted RBP8.7□□□□□ -1.02
SCFD1-220ENST00000556486 MARCOQ9UEW3 520 aaPredicted RBP8.7□□□□□ -1.02
SCFD1-220ENST00000556486 TMED7Q9Y3B3 224 aa8.7□□□□□ -1.02
SCFD1-220ENST00000556486 DSPPQ9NZW4 1301 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms