RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 UPK3AO75631 287 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 ZNF432O94892 652 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 MT-ATP6P00846 226 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 ERCC1P07992 297 aaPredicted RBP9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 NQO1P15559 274 aaKnown RBP9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 CBR1P16152 277 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 PTNP21246 168 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 GRPRP30550 384 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 SLC25A3Q00325 362 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 IL1RL1Q01638 556 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 ROR2Q01974 943 aaKnown RBP9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 OR1Q1Q15612 314 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 SWI5Q1ZZU3 235 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 RUNDC3AQ59EK9 446 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 METTL21CQ5VZV1 264 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 ZNF613Q6PF04 617 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 B3GLCTQ6Y288 498 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 UEVLDQ8IX04 471 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 KDM8Q8N371 416 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 ZNF540Q8NDQ6 660 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 CKAP2Q8WWK9 683 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 RASSF5Q8WWW0 418 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 SLC41A3Q96GZ6 507 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 ALKBH3Q96Q83 286 aaPredicted RBP9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 TNFRSF13CQ96RJ3 184 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 TMEM43Q9BTV4 400 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 DENND2DQ9H6A0 471 aaPredicted RBP9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 MRPL39Q9NYK5 338 aaKnown RBP9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 B3GAT1Q9P2W7 334 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 NOX1Q9Y5S8 564 aa9.49□□□□□ -0.89
VTI1BP3-201ENST00000550220 ALPK2Q86TB3 2170 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 ABCA1O95477 2261 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 IGHV1-18A0A0C4DH31 117 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 ZNF726A6NNF4 738 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 A8MV72 311 aaPredicted RBP9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 M0R082 166 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 ENTPD5O75356 428 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 MFN2O95140 757 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 IGKV3-15P01624 115 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 IGLV1-44P01699 117 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 HTR2AP28223 471 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 ARF1P84077 181 aaKnown RBP9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 NAAAQ02083 359 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 KRTAP1-1Q07627 177 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 PMS2P3Q13401 168 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 EFNB3Q15768 340 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 ADRM1Q16186 407 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 CYP51A1Q16850 503 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 INTS11Q5TA45 600 aaKnown RBP9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 DLEU7Q6UYE1 221 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 PXKQ7Z7A4 578 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 PATL1Q86TB9 770 aaKnown RBP9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 PRIMA1Q86XR5 153 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 HIPK1Q86Z02 1210 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 NUP37Q8NFH4 326 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 ZNF417Q8TAU3 575 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 RNF217Q8TC41 542 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 ANKRD27Q96NW4 1050 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 ZNF587Q96SQ5 575 aaPredicted RBP9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 SH3GL1Q99961 368 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 CRLF2Q9HC73 371 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 GPR35Q9HC97 309 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 YAE1D1Q9NRH1 226 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 CA10Q9NS85 328 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 KLHL14Q9P2G3 628 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 USP22Q9UPT9 525 aa9.48□□□□□ -0.89
VTI1BP3-201ENST00000550220 IGKV1D-42A0A075B6H8 117 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 IGHV4-30-2A0A087WSY4 118 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 A0A096LPE4 126 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 A0A1W2PPZ6 126 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 ZNF99A8MXY4 864 aaPredicted RBP9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 M0QX08 132 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 TPST1O60507 370 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 OR6A2O95222 327 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 OR4A8P0C604 315 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 USF1P22415 310 aaPredicted RBP9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 PDLIM4P50479 330 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 CDH12P55289 794 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 PCBP3P57721 371 aaKnown RBP9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 VLDLRP98155 873 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 PUDPQ08623 228 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 CYLC2Q14093 348 aaPredicted RBP9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 MST1LQ2TV78 715 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 CEACAM16Q2WEN9 425 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 TMEM249Q2WGJ8 235 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 CHRFAM7AQ494W8 412 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 TTMPQ5BVD1 217 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 CYB5R2Q6BCY4 276 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 PODNL1Q6PEZ8 512 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 SLC46A3Q7Z3Q1 461 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 DHDDSQ86SQ9 333 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 C20orf196Q8IYI0 205 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 C10orf53Q8N6V4 93 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 MAPK1IP1LQ8NDC0 245 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 C10orf105Q8TEF2 133 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 NANOS1Q8WY41 292 aaKnown RBP9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 FBXO17Q96EF6 278 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 OR2M2Q96R28 347 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 CGREF1Q99674 301 aa9.47□□□□□ -0.89
VTI1BP3-201ENST00000550220 CPPED1Q9BRF8 314 aaPredicted RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms