RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 THSD4Q6ZMP0 1018 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 BEST3Q8N1M1 668 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 PRDM9Q9NQV7 894 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 HS3ST3A1Q9Y663 406 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 PDCD11Q14690 1871 aaKnown RBP14.39□□□□□ -0.11
CUX1-211ENST00000546411 TLCD2A6NGC4 264 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 PCP4L1A6NKN8 68 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 TEX46H3BTG2 121 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 ACOT7O00154 380 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 ZNF749O43361 778 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 TSPAN9O75954 239 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 CRYBB2P43320 205 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 HSD11B2P80365 405 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 TDGQ13569 410 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 AWAT2Q6E213 333 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 TMEM17Q86X19 198 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 UEVLDQ8IX04 471 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 BCORP1Q8N888 145 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 PLPP7Q8NBV4 271 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 ACBD4Q8NC06 268 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 NRIP3Q9NQ35 241 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 IL20Q9NYY1 176 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 ABRACLQ9P1F3 81 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 NUBP2Q9Y5Y2 271 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 SCN4AP35499 1836 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 F5H0A9 414 aaPredicted RBP14.39□□□□□ -0.11
CUX1-211ENST00000546411 LILRB5O75023 590 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 JMJD7P0C870 316 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 MAGEB1P43366 347 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 VEGFCP49767 419 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 RRAS2P62070 204 aaPredicted RBP14.39□□□□□ -0.11
CUX1-211ENST00000546411 DGCR2P98153 550 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 C1orf53Q5VUE5 145 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 CFAP77Q6ZQR2 320 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 KIF18BQ86Y91 864 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 UBQLN2Q9UHD9 624 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 GOSR2O14653 212 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 RBMXL2O75526 392 aaKnown RBP14.39□□□□□ -0.11
CUX1-211ENST00000546411 SLC22A5O76082 557 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 TCRBP04435 133 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 SFTPBP07988 381 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 CT62P0C5K7 136 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 CRABP1P29762 137 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 EEF1A2Q05639 463 aaKnown RBP14.39□□□□□ -0.11
CUX1-211ENST00000546411 CAMK2DQ13557 499 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 GPR176Q14439 515 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 FAAP20Q6NZ36 180 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 TMEM205Q6UW68 189 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 DPY19L2P2Q6ZN68 376 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 BOLLQ8N9W6 283 aaKnown RBP14.39□□□□□ -0.11
CUX1-211ENST00000546411 SRRQ9GZT4 340 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 PLSCR3Q9NRY6 295 aa14.39□□□□□ -0.11
CUX1-211ENST00000546411 POM121CA8CG34 1229 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 EFCAB7A8K855 629 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 ENDOUP21128 410 aaKnown RBP14.38□□□□□ -0.11
CUX1-211ENST00000546411 HTR3AP46098 478 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 TEKQ02763 1124 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 ABCA11PQ4W5N1 156 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 BAIAP2L2Q6UXY1 529 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 ABHD12BQ7Z5M8 362 aaPredicted RBP14.38□□□□□ -0.11
CUX1-211ENST00000546411 THRSPQ92748 146 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 DVL3Q92997 716 aaPredicted RBP14.38□□□□□ -0.11
CUX1-211ENST00000546411 MICU1Q9BPX6 476 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 SLC25A19Q9HC21 320 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 LOC285556D6RIA3 1793 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 B4DXG7 233 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 GPRIN2O60269 458 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 SRMP19623 302 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 LSSP48449 732 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 LAIR2Q6ISS4 152 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 CCDC190Q86UF4 302 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 OR5T2Q8NGG2 359 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 SLC22A8Q8TCC7 542 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.38□□□□□ -0.11
CUX1-211ENST00000546411 OR6C1Q96RD1 312 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 ZNF350Q9GZX5 532 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 REV1Q9UBZ9 1251 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 APC2O95996 2303 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 WRBO00258 174 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 DNAJB6O75190 326 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 RP2O75695 350 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 SPDEFO95238 335 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 F10P00742 488 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 DCNP07585 359 aaKnown RBP14.38□□□□□ -0.11
CUX1-211ENST00000546411 SLC2A1P11166 492 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 RBMS1P29558 406 aaKnown RBP14.38□□□□□ -0.11
CUX1-211ENST00000546411 ACY1Q03154 408 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 GPR50Q13585 617 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 GRK1Q15835 563 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 SLC25A35Q3KQZ1 300 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 DMRTC1Q5HYR2 192 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 CCDC28AQ8IWP9 274 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 DERL3Q96Q80 235 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 EMC9Q9Y3B6 208 aa14.38□□□□□ -0.11
CUX1-211ENST00000546411 PTRH2Q9Y3E5 179 aaKnown RBP14.38□□□□□ -0.11
CUX1-211ENST00000546411 TMED7-TICAM2A0A0A6YYA0 188 aa14.37□□□□□ -0.11
CUX1-211ENST00000546411 SULT2B1O00204 365 aa14.37□□□□□ -0.11
CUX1-211ENST00000546411 SPI1P17947 270 aa14.37□□□□□ -0.11
CUX1-211ENST00000546411 EVX1P49640 407 aa14.37□□□□□ -0.11
CUX1-211ENST00000546411 CDK5Q00535 292 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms