RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ZNF767PQ75MW2 155 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 TMEM151BQ8IW70 566 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 BCORP1Q8N888 145 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 LSM14AQ8ND56 463 aaKnown RBP13.72□□□□□ -0.21
USP28-214ENST00000545540 TRIM2Q9C040 744 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 OR8D2Q9GZM6 311 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 LYRM4Q9HD34 91 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 MGAT4CQ9UBM8 478 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 A0A087WV62 115 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 ELOA3DA6NLF2 546 aaPredicted RBP13.72□□□□□ -0.21
USP28-214ENST00000545540 ZNF879B4DU55 563 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 TNFSF14O43557 240 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 TRIM3O75382 744 aaPredicted RBP13.72□□□□□ -0.21
USP28-214ENST00000545540 RLN1P04808 185 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 AP2S1P53680 142 aaPredicted RBP13.72□□□□□ -0.21
USP28-214ENST00000545540 ACTC1P68032 377 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 ACTA1P68133 377 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 SNTA1Q13424 505 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 GRK1Q15835 563 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 ELOA3BQ3SY89 546 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 OR5M10Q6IEU7 315 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 MED25Q71SY5 747 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 ELOA3Q8NG57 546 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.72□□□□□ -0.21
USP28-214ENST00000545540 ADAMTS14Q8WXS8 1223 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 C3orf49Q96BT1 292 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 KTI12Q96EK9 354 aaPredicted RBP13.72□□□□□ -0.21
USP28-214ENST00000545540 VSTM2LQ96N03 204 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 MICU1Q9BPX6 476 aa13.72□□□□□ -0.21
USP28-214ENST00000545540 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.72□□□□□ -0.21
USP28-214ENST00000545540 OR1D4P47884 311 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 SHHQ15465 462 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 TOMM34Q15785 309 aaPredicted RBP13.71□□□□□ -0.21
USP28-214ENST00000545540 ESCO2Q56NI9 601 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 RPL13AP3Q6NVV1 102 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 MCATQ8IVS2 390 aaKnown RBP13.71□□□□□ -0.21
USP28-214ENST00000545540 HAVCR2Q8TDQ0 301 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 ADOQ96SZ5 270 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 SYT4Q9H2B2 425 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 TCF7L1Q9HCS4 588 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 FRRS1LQ9P0K9 344 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 CAMK2AQ9UQM7 478 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 TICRRQ7Z2Z1 1910 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 FREM3P0C091 2139 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 A0A0J9YY10 115 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 KDM4BO94953 1096 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 SLC35E2P0CK97 266 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 LTBQ06643 244 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 C2orf68Q2NKX9 166 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 ARMC6Q6NXE6 501 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 MDGA2Q7Z553 956 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 SMIM4Q8WVI0 70 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 NKX2-4Q9H2Z4 354 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 NOX3Q9HBY0 568 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 INPP5EQ9NRR6 644 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 GLTPQ9NZD2 209 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 DENND4AQ7Z401 1863 aa13.71□□□□□ -0.21
USP28-214ENST00000545540 IGKV1D-42A0A075B6H8 117 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 SIGLEC5O15389 551 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 ITPKBP27987 946 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 SIGLEC14Q08ET2 396 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 GRM7Q14831 915 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 SMAD2Q15796 467 aaKnown RBP13.71□□□□□ -0.22
USP28-214ENST00000545540 CDONQ4KMG0 1287 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 NKAIN2Q5VXU1 208 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 RPL22L1Q6P5R6 122 aaKnown RBP13.71□□□□□ -0.22
USP28-214ENST00000545540 SHISA6Q6ZSJ9 500 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 BTN2A1Q7KYR7 527 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 COMMD7Q86VX2 200 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 OOSP2Q86WS3 158 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 GPR137Q96N19 417 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 DGAT2Q96PD7 388 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 OR10A5Q9H207 317 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 RANBP3Q9H6Z4 567 aaPredicted RBP13.71□□□□□ -0.22
USP28-214ENST00000545540 Q9N2J8 555 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 PRTFDC1Q9NRG1 225 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 RXFP3Q9NSD7 469 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 V9GY05 133 aa13.71□□□□□ -0.22
USP28-214ENST00000545540 C2orf72A6NCS6 295 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 G3V3Q6 166 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 GALP22466 123 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 GAS6Q14393 721 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 ZMYND11Q15326 602 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 TCTE1Q5JU00 501 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 SIGIRRQ6IA17 410 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 JAZF1Q86VZ6 243 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 OR51D1Q8NGF3 324 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 OR14A16Q8NHC5 309 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 RBP7Q96R05 134 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 OR2M2Q96R28 347 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 ZNF426Q9BUY5 554 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 ZNF436Q9C0F3 470 aaPredicted RBP13.7□□□□□ -0.22
USP28-214ENST00000545540 MRPL39Q9NYK5 338 aaKnown RBP13.7□□□□□ -0.22
USP28-214ENST00000545540 MRM2Q9UI43 246 aaKnown RBP13.7□□□□□ -0.22
USP28-214ENST00000545540 ELF5Q9UKW6 265 aaPredicted RBP13.7□□□□□ -0.22
USP28-214ENST00000545540 PIAS3Q9Y6X2 628 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 COL6A3P12111 3177 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 SERINC4A6NH21 518 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 PEX14O75381 377 aa13.7□□□□□ -0.22
USP28-214ENST00000545540 PSMB1P20618 241 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 106.6 ms