RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 LRRN3E7EW58 273 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 KPNA4O00629 521 aaPredicted RBP13.81□□□□□ -0.2
CCDC78-216ENST00000544996 PLPP3O14495 311 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 SHOX2O60902 331 aaPredicted RBP13.81□□□□□ -0.2
CCDC78-216ENST00000544996 SMPD2O60906 423 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 ZNF432O94892 652 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 CH25HO95992 272 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 HIST1H2ABP04908 130 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 ADORA3P0DMS8 318 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 THRBP10828 461 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 RBM34P42696 430 aaKnown RBP13.81□□□□□ -0.2
CCDC78-216ENST00000544996 PRPS1P60891 318 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 POU3F1Q03052 451 aaPredicted RBP13.81□□□□□ -0.2
CCDC78-216ENST00000544996 PIN1Q13526 163 aaPredicted RBP13.81□□□□□ -0.2
CCDC78-216ENST00000544996 ZNF74Q16587 644 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 ADAM5Q6NVV9 412 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 HIST3H2AQ7L7L0 130 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 PXKQ7Z7A4 578 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 TSPYL5Q86VY4 417 aaPredicted RBP13.81□□□□□ -0.2
CCDC78-216ENST00000544996 PIK3C3Q8NEB9 887 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 ANKK1Q8NFD2 765 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 HIST1H2ACQ93077 130 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 RADILQ96JH8 1075 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 ALKBH3Q96Q83 286 aaPredicted RBP13.81□□□□□ -0.2
CCDC78-216ENST00000544996 FKRPQ9H9S5 495 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 ABCD2Q9UBJ2 740 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 ZNF229Q9UJW7 825 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 MGAT4BQ9UQ53 548 aa13.81□□□□□ -0.2
CCDC78-216ENST00000544996 A0A1W2PR80 420 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 ZNF726A6NNF4 738 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 TRAF3IP2O43734 574 aaPredicted RBP13.8□□□□□ -0.2
CCDC78-216ENST00000544996 GMNNO75496 209 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 UPK3AO75631 287 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 ZNF682O95780 498 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 WNT11O96014 354 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 HPRP00739 348 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 IFNW1P05000 195 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 UMPSP11172 480 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 PTAFRP25105 342 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 ZNF83P51522 516 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 SH3BGRP55822 239 aaPredicted RBP13.8□□□□□ -0.2
CCDC78-216ENST00000544996 ROR2Q01974 943 aaKnown RBP13.8□□□□□ -0.2
CCDC78-216ENST00000544996 LGALS3BPQ08380 585 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 ST3GAL3Q11203 375 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 ZNF611Q8N823 705 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 FAM162AQ96A26 154 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 HS6ST2Q96MM7 605 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 PRSS27Q9BQR3 290 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 OBP2BQ9NPH6 170 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 SLC17A5Q9NRA2 495 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 ADA2Q9NZK5 511 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 NPAP1Q9NZP6 1156 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 GMPR2Q9P2T1 348 aaKnown RBP13.8□□□□□ -0.2
CCDC78-216ENST00000544996 FREM1Q5H8C1 2179 aa13.8□□□□□ -0.2
CCDC78-216ENST00000544996 HRNRQ86YZ3 2850 aaPredicted RBP13.8□□□□□ -0.2
CCDC78-216ENST00000544996 ABCD4O14678 606 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 ARHGEF9O43307 516 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 SERPINI2O75830 405 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 SERPINA1P01009 418 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 MT-ND1P03886 318 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 HLA-DOBP13765 273 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 PAX7P23759 505 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 UBE2NP61088 152 aaKnown RBP13.79□□□□□ -0.2
CCDC78-216ENST00000544996 FOXD4Q12950 439 aaPredicted RBP13.79□□□□□ -0.2
CCDC78-216ENST00000544996 IFI44LQ53G44 452 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 FKBP9P1Q75LS8 142 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 CBLL1Q75N03 491 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 DEPDC4Q8N2C3 294 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 PIAS4Q8N2W9 510 aaPredicted RBP13.79□□□□□ -0.2
CCDC78-216ENST00000544996 WDR31Q8NA23 367 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 OR1K1Q8NGR3 316 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 TMEM171Q8WVE6 324 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 TMEM239Q8WW34 195 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 GEMIN6Q8WXD5 167 aaKnown RBP13.79□□□□□ -0.2
CCDC78-216ENST00000544996 FBXW5Q969U6 566 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 BOD1Q96IK1 185 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 PRRC1Q96M27 445 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 OR2M2Q96R28 347 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 C1QTNF6Q9BXI9 259 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 CXorf56Q9H5V9 222 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 B3GAT2Q9NPZ5 323 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 TAGLN3Q9UI15 199 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 MED31Q9Y3C7 131 aa13.79□□□□□ -0.2
CCDC78-216ENST00000544996 SLC35F4A4IF30 521 aa13.78□□□□□ -0.2
CCDC78-216ENST00000544996 C11orf98E9PRG8 122 aa13.78□□□□□ -0.2
CCDC78-216ENST00000544996 RPL36A-HNRNPH2H7BZ11 118 aa13.78□□□□□ -0.2
CCDC78-216ENST00000544996 M0R1B8 84 aa13.78□□□□□ -0.2
CCDC78-216ENST00000544996 RNF13O43567 381 aa13.78□□□□□ -0.2
CCDC78-216ENST00000544996 TMCC2O75069 709 aa13.78□□□□□ -0.2
CCDC78-216ENST00000544996 IGF2P01344 180 aa13.78□□□□□ -0.2
CCDC78-216ENST00000544996 ASAH2BP0C7U1 165 aa13.78□□□□□ -0.2
CCDC78-216ENST00000544996 CD40P25942 277 aa13.78□□□□□ -0.2
CCDC78-216ENST00000544996 NKX6-1P78426 367 aaPredicted RBP13.78□□□□□ -0.2
CCDC78-216ENST00000544996 TBRG1Q3YBR2 411 aa13.78□□□□□ -0.2
CCDC78-216ENST00000544996 ZNF672Q499Z4 452 aaPredicted RBP13.78□□□□□ -0.2
CCDC78-216ENST00000544996 HIKESHIQ53FT3 197 aa13.78□□□□□ -0.2
CCDC78-216ENST00000544996 GKAP1Q5VSY0 366 aaPredicted RBP13.78□□□□□ -0.2
CCDC78-216ENST00000544996 CARD17Q5XLA6 110 aa13.78□□□□□ -0.2
CCDC78-216ENST00000544996 ANKRD16Q6P6B7 361 aa13.78□□□□□ -0.2
CCDC78-216ENST00000544996 SLC22A25Q6T423 547 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms