RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 OR6C65A6NJZ3 312 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 TMPRSS2O15393 492 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 EDF1O60869 148 aaKnown RBP11.04□□□□□ -0.64
USP28-212ENST00000544750 SLC22A3O75751 556 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 AGR2O95994 175 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 TFP02787 698 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 COL8A2P25067 703 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 EVX1P49640 407 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 SH3BGRP55822 239 aaPredicted RBP11.04□□□□□ -0.64
USP28-212ENST00000544750 LMO4P61968 165 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 IL1RL1Q01638 556 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 EPS8Q12929 822 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 SCGB2A2Q13296 93 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 OR7A5Q15622 319 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 TNFAIP8L2Q6P589 184 aaPredicted RBP11.04□□□□□ -0.64
USP28-212ENST00000544750 GPAT4Q86UL3 456 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 CMIPQ8IY22 773 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 VPS37AQ8NEZ2 397 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 STON2Q8WXE9 905 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 LRRC37BQ96QE4 947 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 SLC35A5Q9BS91 424 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 CCDC28BQ9BUN5 200 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 TPK1Q9H3S4 243 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 DYNLRB1Q9NP97 96 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 G6PC2Q9NQR9 355 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 USP22Q9UPT9 525 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 GRIP1Q9Y3R0 1128 aa11.04□□□□□ -0.64
USP28-212ENST00000544750 CCDC154A6NI56 674 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 VSTM5A8MXK1 200 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 POLR3GO15318 223 aaPredicted RBP11.03□□□□□ -0.64
USP28-212ENST00000544750 NPIPB7O75200 414 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 KRT33AO76009 404 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 ZNF432O94892 652 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 VAMP5O95183 116 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 HPXP02790 462 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 IL6P05231 212 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 GSNP06396 782 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 GAAP10253 952 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 HOXB9P17482 250 aaPredicted RBP11.03□□□□□ -0.64
USP28-212ENST00000544750 EPHA1P21709 976 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 RPS4Y1P22090 263 aaKnown RBP11.03□□□□□ -0.64
USP28-212ENST00000544750 ACHEP22303 614 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 GPR6P46095 362 aaPredicted RBP11.03□□□□□ -0.64
USP28-212ENST00000544750 LIMS1P48059 325 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 POLR2JP52435 117 aaKnown RBP11.03□□□□□ -0.64
USP28-212ENST00000544750 ATAD3BQ5T9A4 648 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 NIPAL3Q6P499 406 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 THSD4Q6ZMP0 1018 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 FUNDC1Q8IVP5 155 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 MIER2Q8N344 545 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 ANKK1Q8NFD2 765 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 MRPL24Q96A35 216 aaKnown RBP11.03□□□□□ -0.64
USP28-212ENST00000544750 THOC1Q96FV9 657 aaKnown RBP11.03□□□□□ -0.64
USP28-212ENST00000544750 PANX1Q96RD7 426 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 ZBTB18Q99592 522 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 ZNF747Q9BV97 191 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 MRPL37Q9BZE1 423 aaKnown RBP11.03□□□□□ -0.64
USP28-212ENST00000544750 SLC38A1Q9H2H9 487 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 LPAR2Q9HBW0 351 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 NOX3Q9HBY0 568 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 ESM1Q9NQ30 184 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 SLC52A3Q9NQ40 469 aa11.03□□□□□ -0.64
USP28-212ENST00000544750 VWFP04275 2813 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 AGAP5A6NIR3 686 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 HMGN4O00479 90 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 FRS3O43559 492 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 SYNGR3O43761 229 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 PNPP00491 289 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 SAGP10523 405 aaPredicted RBP11.02□□□□□ -0.65
USP28-212ENST00000544750 NR4A1P22736 598 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 ARR3P36575 388 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 MVDP53602 400 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 ARF1P84077 181 aaKnown RBP11.02□□□□□ -0.65
USP28-212ENST00000544750 ROR2Q01974 943 aaKnown RBP11.02□□□□□ -0.65
USP28-212ENST00000544750 LRRC74AQ0VAA2 488 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 SNTB2Q13425 540 aaKnown RBP11.02□□□□□ -0.65
USP28-212ENST00000544750 DAG1Q14118 895 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 GTDC1Q4AE62 458 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 COX20Q5RI15 118 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 TMEM225Q6GV28 225 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 MSANTD1Q6ZTZ1 278 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 RNF130Q86XS8 419 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 ZDHHC22Q8N966 263 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 IL17RDQ8NFM7 739 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 OR51F2Q8NH61 342 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 YIPF5Q969M3 257 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 VPS33AQ96AX1 596 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 ZNF837Q96EG3 531 aaPredicted RBP11.02□□□□□ -0.65
USP28-212ENST00000544750 ZNF75AQ96N20 296 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 JMJD8Q96S16 334 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 ZNF385DQ9H6B1 395 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 NARFLQ9H6Q4 476 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 B3GNT2Q9NY97 397 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 TREM2Q9NZC2 230 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 CMAHPQ9Y471 501 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 PCDHGB1Q9Y5G3 927 aa11.02□□□□□ -0.65
USP28-212ENST00000544750 LOC105371242A0A075B767 164 aa11.01□□□□□ -0.65
USP28-212ENST00000544750 TRAV20A0A0B4J274 112 aa11.01□□□□□ -0.65
USP28-212ENST00000544750 CFAP73A6NFT4 308 aa11.01□□□□□ -0.65
USP28-212ENST00000544750 FTCDNL1E5RQL4 147 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms