RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 TBXA2RP21731 343 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 DNASE1P24855 282 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 RFC3P40938 356 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 MLLT10P55197 1068 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 PPIAP62937 165 aaKnown RBP4.61□□□□□ -1.67
CLIP1-217ENST00000543205 SYPL1Q16563 259 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 GCNT6Q5T4J0 391 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 FAM91A1Q658Y4 838 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 WDR88Q6ZMY6 472 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 MARCH3Q86UD3 253 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 STK32CQ86UX6 486 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 SLC22A16Q86VW1 577 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 MSRB3Q8IXL7 192 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 LINC00469Q8N7U9 141 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 OR1J4Q8NGS1 313 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 TMEM171Q8WVE6 324 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 RAB40AQ8WXH6 277 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 TMEM186Q96B77 213 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 ROPN1LQ96C74 230 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 LRRC58Q96CX6 371 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 SNRNP40Q96DI7 357 aaKnown RBP4.61□□□□□ -1.67
CLIP1-217ENST00000543205 ZNF597Q96LX8 424 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 ANKRD27Q96NW4 1050 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 TRNT1Q96Q11 434 aaKnown RBP4.61□□□□□ -1.67
CLIP1-217ENST00000543205 TAAR6Q96RI8 345 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 CDRT15Q96T59 188 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 SYT3Q9BQG1 590 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 TACO1Q9BSH4 297 aaKnown RBP4.61□□□□□ -1.67
CLIP1-217ENST00000543205 KATNB1Q9BVA0 655 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 TTTY12Q9BZ98 90 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 RIBC2Q9H4K1 309 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 CACYBPQ9HB71 228 aaKnown RBP4.61□□□□□ -1.67
CLIP1-217ENST00000543205 HHATLQ9HCP6 504 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 GALNT9Q9HCQ5 603 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 TUBA8Q9NY65 449 aaPredicted RBP4.61□□□□□ -1.67
CLIP1-217ENST00000543205 CALML5Q9NZT1 146 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 FLRT3Q9NZU0 649 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 PPP4R1LQ9P1A2 415 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 MALT1Q9UDY8 824 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 ABCG2Q9UNQ0 655 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 WDR45Q9Y484 360 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 GMEB1Q9Y692 573 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 CPAMD8Q8IZJ3 1885 aa4.61□□□□□ -1.67
CLIP1-217ENST00000543205 NPIPA5A0A0B4J1W7 369 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 SERTM2A0A1B0GWG4 89 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 PINLYPA6NC86 204 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 FAM166BA8MTA8 275 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 NPIPA7E9PJI5 369 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 NPIPA5E9PKD4 350 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 H3BNH8 94 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 TFECO14948 347 aaPredicted RBP4.6□□□□□ -1.67
CLIP1-217ENST00000543205 FADS1O60427 444 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 FCMRO60667 390 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 TRIM3O75382 744 aaPredicted RBP4.6□□□□□ -1.67
CLIP1-217ENST00000543205 H6PDO95479 791 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 OXSR1O95747 527 aaPredicted RBP4.6□□□□□ -1.67
CLIP1-217ENST00000543205 ANGPTL1O95841 491 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 BCHEP06276 602 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 LIPFP07098 398 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 NGFRP08138 427 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 GUSBP08236 651 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 NPIPA8P0DM63 369 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 MED14OSP0DP75 135 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 MYF6P23409 242 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 ELAVL4P26378 380 aaKnown RBP4.6□□□□□ -1.67
CLIP1-217ENST00000543205 DCTP40126 519 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 WNT5AP41221 380 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 PTGDSP41222 190 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 NUDT2P50583 147 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 ZNF134P52741 427 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 CRISP3P54108 245 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 ATP12AP54707 1039 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 MTPNP58546 118 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 CYP51A1Q16850 503 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 PCGF3Q3KNV8 242 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 PRR30Q53SZ7 412 aaPredicted RBP4.6□□□□□ -1.67
CLIP1-217ENST00000543205 PRAMEF8Q5VWM4 474 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 TYW3Q6IPR3 259 aaKnown RBP4.6□□□□□ -1.67
CLIP1-217ENST00000543205 NANOGP8Q6NSW7 305 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 LRRC74BQ6ZQY2 392 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 CENPVQ7Z7K6 275 aaPredicted RBP4.6□□□□□ -1.67
CLIP1-217ENST00000543205 FAM219AQ8IW50 185 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 ZNF614Q8N883 585 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 C11orf44Q8N8P7 122 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 ANKFN1Q8N957 763 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 ZFP62Q8NB50 900 aaPredicted RBP4.6□□□□□ -1.67
CLIP1-217ENST00000543205 OR8J3Q8NGG0 315 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 OR4C3Q8NH37 302 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 SLC38A5Q8WUX1 472 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 FAR1Q8WVX9 515 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 MAL2Q969L2 176 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 SLAMF9Q96A28 289 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 TMIGD2Q96BF3 282 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 HIST1H2AAQ96QV6 131 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 HOPXQ9BPY8 73 aaPredicted RBP4.6□□□□□ -1.67
CLIP1-217ENST00000543205 ECSITQ9BQ95 431 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 CPPED1Q9BRF8 314 aaPredicted RBP4.6□□□□□ -1.67
CLIP1-217ENST00000543205 GON7Q9BXV9 100 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 EVA1AQ9H8M9 152 aa4.6□□□□□ -1.67
CLIP1-217ENST00000543205 NANOGQ9H9S0 305 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms