RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 B3GNT2Q9NY97 397 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 ZNF224Q9NZL3 707 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 RCE1Q9Y256 329 aa13.33□□□□□ -0.28
CLSTN3-213ENST00000541953 FAM157AC9JC47 383 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 RGS9O75916 674 aaPredicted RBP13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 KRT75O95678 551 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 HPXP02790 462 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 IFNGR1P15260 489 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 ZNF43P17038 809 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 HOXB9P17482 250 aaPredicted RBP13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 TCN1P20061 433 aaPredicted RBP13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 GRPRP30550 384 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 ANXA11P50995 505 aaKnown RBP13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 AQP5P55064 265 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 SH3BGRP55822 239 aaPredicted RBP13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 WDR4P57081 412 aaKnown RBP13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 TXNL4AP83876 142 aaKnown RBP13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 DAG1Q14118 895 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 MAD2L1BPQ15013 274 aaPredicted RBP13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 SLC9B1Q4ZJI4 515 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 TNFAIP8L3Q5GJ75 292 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 ELFN2Q5R3F8 820 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 CARD17Q5XLA6 110 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 RFLNBQ8N5W9 214 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 ZNF540Q8NDQ6 660 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 UBASH3BQ8TF42 649 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 NEU4Q8WWR8 484 aaPredicted RBP13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 ZNF317Q96PQ6 595 aaPredicted RBP13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 WFDC6Q9BQY6 131 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 EMC6Q9BV81 110 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 DYNLRB1Q9NP97 96 aa13.32□□□□□ -0.28
CLSTN3-213ENST00000541953 TRRAPQ9Y4A5 3859 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 CMYA5Q8N3K9 4069 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 LRRN3E7EW58 273 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 M0R3G1 203 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 TM9SF1O15321 606 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 RGS16O15492 202 aaPredicted RBP13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 WIPF1O43516 503 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 SLC43A1O75387 559 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 NCR1O76036 304 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 KITP10721 976 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 COL8A2P25067 703 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 SRP14P37108 136 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 ALDH3B1P43353 468 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 CAPZA2P47755 286 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 SEC24CP53992 1094 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 IL1RL1Q01638 556 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 LARS2Q15031 903 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 GLIPR1L2Q4G1C9 344 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 PDCD4Q53EL6 469 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 ZNF311Q5JNZ3 666 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 LIPNQ5VXI9 398 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 C6orf89Q6UWU4 347 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 NHLRC1Q6VVB1 395 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 GPR137CQ8N3F9 429 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 SEMA6DQ8NFY4 1073 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 YIPF5Q969M3 257 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 OXGR1Q96P68 337 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 LPAR2Q9HBW0 351 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 SSU72Q9NP77 194 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 FZR1Q9UM11 496 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 DYSFO75923 2080 aa13.31□□□□□ -0.28
CLSTN3-213ENST00000541953 A0A096LPI6 279 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 A0A1B0GWA3 101 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 ZNF99A8MXY4 864 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 MS4A18H0YCH9 400 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 SNNO75324 88 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 HOXB1P14653 301 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 CFPP27918 469 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 PIGFQ07326 219 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 MS4A18Q3C1V0 323 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 DEF8Q6ZN54 512 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 ANKRD42Q8N9B4 389 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 CLDND2Q8NHS1 167 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 FGFBP3Q8TAT2 258 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 HPS1Q92902 700 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 MRPL24Q96A35 216 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 TXNDC15Q96J42 360 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 OR52B2Q96RD2 323 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 ZBTB18Q99592 522 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 PAIP2Q9BPZ3 127 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 SYT3Q9BQG1 590 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 PLA2G12AQ9BZM1 189 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 PAIP1Q9H074 479 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 KCNK9Q9NPC2 374 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 MED29Q9NX70 200 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 CALML5Q9NZT1 146 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 KLHL14Q9P2G3 628 aa13.3□□□□□ -0.28
CLSTN3-213ENST00000541953 PKD1L1Q8TDX9 2849 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 A0A0G2JPF8 293 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 HNRNPCL2B2RXH8 293 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 HNRNPCL3B7ZW38 293 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 AIM2O14862 343 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 HDAC3O15379 428 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 TPST1O60507 370 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 HNRNPCL1O60812 293 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 SLC22A3O75751 556 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 SNUPNO95149 360 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 PATE4P0C8F1 98 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 ZCCHC18P0CG32 403 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms