RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 IDSB3KWA1 339 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 F8W036 122 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 PSMD9O00233 223 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 SMAD9O15198 467 aaKnown RBP13.01□□□□□ -0.33
USP48-213ENST00000529637 P2RX6O15547 441 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 CDC123O75794 336 aaPredicted RBP13.01□□□□□ -0.33
USP48-213ENST00000529637 ATG12O94817 140 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 RLN1P04808 185 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 RUNX2Q13950 521 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 HFEQ30201 348 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 MRPL2Q5T653 305 aaKnown RBP13.01□□□□□ -0.33
USP48-213ENST00000529637 PRAMEF8Q5VWM4 474 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 PRAMEF7Q5VXH5 474 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 PARM1Q6UWI2 310 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 CBLN2Q8IUK8 224 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 CDK20Q8IZL9 346 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 MUC20Q8N307 709 aaPredicted RBP13.01□□□□□ -0.33
USP48-213ENST00000529637 TEX19Q8NA77 164 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 OR13C2Q8NGS9 318 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 FBXL3Q9UKT7 428 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 TRANK1O15050 2925 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 NDUFB6O95139 128 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 TRAM1Q15629 374 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 PRSS41Q7RTY9 318 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 ZNF784Q8NCA9 323 aaPredicted RBP13.01□□□□□ -0.33
USP48-213ENST00000529637 C1orf216Q8TAB5 229 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 NR4A3Q92570 626 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 FGF14Q92915 247 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 SDF2Q99470 211 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 PRSS27Q9BQR3 290 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 TMEM74BQ9NUR3 256 aa13.01□□□□□ -0.33
USP48-213ENST00000529637 ZNF230Q9UIE0 474 aaPredicted RBP13.01□□□□□ -0.33
USP48-213ENST00000529637 SZT2Q5T011 3432 aa13□□□□□ -0.33
USP48-213ENST00000529637 CTSVO60911 334 aa13□□□□□ -0.33
USP48-213ENST00000529637 STX11O75558 287 aa13□□□□□ -0.33
USP48-213ENST00000529637 HOXB2P14652 356 aa13□□□□□ -0.33
USP48-213ENST00000529637 CD53P19397 219 aa13□□□□□ -0.33
USP48-213ENST00000529637 DPP4P27487 766 aa13□□□□□ -0.33
USP48-213ENST00000529637 DLX5P56178 289 aa13□□□□□ -0.33
USP48-213ENST00000529637 CBFBQ13951 182 aa13□□□□□ -0.33
USP48-213ENST00000529637 OR5T3Q8NGG3 340 aa13□□□□□ -0.33
USP48-213ENST00000529637 SYNPRQ8TBG9 265 aa13□□□□□ -0.33
USP48-213ENST00000529637 C2CD4CQ8TF44 421 aa13□□□□□ -0.33
USP48-213ENST00000529637 PATE1Q8WXA2 126 aa13□□□□□ -0.33
USP48-213ENST00000529637 NSMAFQ92636 917 aa13□□□□□ -0.33
USP48-213ENST00000529637 ZMYND19Q96E35 227 aaPredicted RBP13□□□□□ -0.33
USP48-213ENST00000529637 CHST6Q9GZX3 395 aa13□□□□□ -0.33
USP48-213ENST00000529637 GPN1Q9HCN4 374 aaPredicted RBP13□□□□□ -0.33
USP48-213ENST00000529637 USP36Q9P275 1121 aaKnown RBP13□□□□□ -0.33
USP48-213ENST00000529637 CACNA1IQ9P0X4 2223 aa13□□□□□ -0.33
USP48-213ENST00000529637 ECDO95905 644 aaPredicted RBP13□□□□□ -0.33
USP48-213ENST00000529637 TYRP1P17643 537 aa13□□□□□ -0.33
USP48-213ENST00000529637 CDK2P24941 298 aa13□□□□□ -0.33
USP48-213ENST00000529637 NAA10P41227 235 aaPredicted RBP13□□□□□ -0.33
USP48-213ENST00000529637 ART1P52961 327 aa13□□□□□ -0.33
USP48-213ENST00000529637 GUCA2BQ16661 112 aa13□□□□□ -0.33
USP48-213ENST00000529637 EIPR1Q53HC9 387 aa13□□□□□ -0.33
USP48-213ENST00000529637 FBXO42Q6P3S6 717 aa13□□□□□ -0.33
USP48-213ENST00000529637 SLC36A1Q7Z2H8 476 aa13□□□□□ -0.33
USP48-213ENST00000529637 ZNF761Q86XN6 746 aaPredicted RBP13□□□□□ -0.33
USP48-213ENST00000529637 RERGQ96A58 199 aaPredicted RBP13□□□□□ -0.33
USP48-213ENST00000529637 DNTTIP1Q9H147 329 aa13□□□□□ -0.33
USP48-213ENST00000529637 STARD5Q9NSY2 213 aa13□□□□□ -0.33
USP48-213ENST00000529637 REV3LO60673 3130 aa13□□□□□ -0.33
USP48-213ENST00000529637 TRAPPC13A5PLN9 417 aa13□□□□□ -0.33
USP48-213ENST00000529637 F5H5P2 479 aa13□□□□□ -0.33
USP48-213ENST00000529637 ZNF254O75437 659 aa13□□□□□ -0.33
USP48-213ENST00000529637 CPMP14384 443 aa13□□□□□ -0.33
USP48-213ENST00000529637 SRMP19623 302 aa13□□□□□ -0.33
USP48-213ENST00000529637 GABRA3P34903 492 aa13□□□□□ -0.33
USP48-213ENST00000529637 BEX5Q5H9J7 111 aa13□□□□□ -0.33
USP48-213ENST00000529637 TMEM69Q5SWH9 247 aa13□□□□□ -0.33
USP48-213ENST00000529637 FIGLAQ6QHK4 219 aa13□□□□□ -0.33
USP48-213ENST00000529637 LNX2Q8N448 690 aa13□□□□□ -0.33
USP48-213ENST00000529637 TMEM239Q8WW34 195 aa13□□□□□ -0.33
USP48-213ENST00000529637 FOXJ3Q9UPW0 622 aa13□□□□□ -0.33
USP48-213ENST00000529637 MRPS2Q9Y399 296 aaKnown RBP13□□□□□ -0.33
USP48-213ENST00000529637 OR10H1Q9Y4A9 318 aa13□□□□□ -0.33
USP48-213ENST00000529637 CACNA1CQ13936 2221 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 ARPC4-TTLL3A0A0A6YYG9 625 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 TRBV2A0A0J9YWF9 115 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 FAM86C2PA6NEL3 165 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 URADA6NGE7 173 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 SLC22A31A6NKX4 558 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 SNRPGP15A8MWD9 76 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 PRSS44E7EML9 344 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 PRAMEF2O60811 474 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 AGR2O95994 175 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 F12P00748 615 aaPredicted RBP12.99□□□□□ -0.33
USP48-213ENST00000529637 OR1Q1Q15612 314 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 DCST2Q5T1A1 773 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 LDLRAD3Q86YD5 345 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 PUSL1Q8N0Z8 303 aaKnown RBP12.99□□□□□ -0.33
USP48-213ENST00000529637 OR2AK2Q8NG84 335 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 PHOSPHO2Q8TCD6 241 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 SMIM19Q96E16 107 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 C10orf90Q96M02 699 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 HS6ST2Q96MM7 605 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 ZNF75AQ96N20 296 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 MYADMQ96S97 322 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms