RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 OAFQ86UD1 273 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 CDK20Q8IZL9 346 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 LRRC75AQ8NAA5 344 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 ADPRHL1Q8NDY3 354 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 OR51A7Q8NH64 312 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 FANK1Q8TC84 345 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 INTS12Q96CB8 462 aaKnown RBP13.65□□□□□ -0.22
LSM1-203ENST00000520755 TNFRSF13CQ96RJ3 184 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 ASPNQ9BXN1 380 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 UCK2Q9BZX2 261 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 ENKD1Q9H0I2 346 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 EGLN3Q9H6Z9 239 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 TAS2R5Q9NYW4 299 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 CLEC4AQ9UMR7 237 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 POFUT2Q9Y2G5 429 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 CDH10Q9Y6N8 788 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 PCNX1Q96RV3 2341 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 MYO18BQ8IUG5 2567 aa13.65□□□□□ -0.22
LSM1-203ENST00000520755 A0A1W2PNV4 684 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 CLEC18AA5D8T8 446 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 HSPB2A8KAH6 182 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 MS4A18H0YCH9 400 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 PLPP3O14495 311 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 RCBTB2O95199 551 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 PLGP00747 810 aaPredicted RBP13.64□□□□□ -0.23
LSM1-203ENST00000520755 GSTM3P21266 225 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 EPHA2P29317 976 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 AQP2P41181 271 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 FOXF2Q12947 444 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 HSPB2Q16082 182 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 MS4A18Q3C1V0 323 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 ZBED5Q49AG3 693 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 OR2A2Q6IF42 318 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 CLEC18BQ6UXF7 455 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 CCDC103Q8IW40 242 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 MCEMP1Q8IX19 187 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 PARP8Q8N3A8 854 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 CLDN22Q8N7P3 220 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 CLEC18CQ8NCF0 446 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 MAGEE2Q8TD90 523 aaPredicted RBP13.64□□□□□ -0.23
LSM1-203ENST00000520755 RNF128Q8TEB7 428 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 SSC4DQ8WTU2 575 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 ABHD3Q8WU67 409 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 ITLN2Q8WWU7 325 aaPredicted RBP13.64□□□□□ -0.23
LSM1-203ENST00000520755 DNAJC9Q8WXX5 260 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 MBOAT4Q96T53 435 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 OR52D1Q9H346 318 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 RNF122Q9H9V4 155 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 FANCFQ9NPI8 374 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 PAPOLBQ9NRJ5 636 aaKnown RBP13.64□□□□□ -0.23
LSM1-203ENST00000520755 KRT84Q9NSB2 600 aa13.64□□□□□ -0.23
LSM1-203ENST00000520755 ING1Q9UK53 422 aaPredicted RBP13.64□□□□□ -0.23
LSM1-203ENST00000520755 INTS1Q8N201 2190 aaKnown RBP13.64□□□□□ -0.23
LSM1-203ENST00000520755 TENM4Q6N022 2769 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 ZNF716A6NP11 495 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 MCIDASD6RGH6 385 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 E9PQ18 207 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 OSMP13725 252 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 GTF2E2P29084 291 aaKnown RBP13.63□□□□□ -0.23
LSM1-203ENST00000520755 SIRPAP78324 504 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 PMS2P3Q13401 168 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 SLC36A3Q495N2 470 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 NHLRC1Q6VVB1 395 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 H1FNTQ75WM6 255 aaPredicted RBP13.63□□□□□ -0.23
LSM1-203ENST00000520755 IGFN1Q86VF2 1251 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 WDFY1Q8IWB7 410 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 KDM8Q8N371 416 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 GALNT4Q8N4A0 578 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 PACRGLQ8N7B6 248 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 CNEP1R1Q8N9A8 125 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 SAMD8Q96LT4 415 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 ZFP3Q96NJ6 502 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 NAA11Q9BSU3 229 aaPredicted RBP13.63□□□□□ -0.23
LSM1-203ENST00000520755 GABARAPL3Q9BY60 117 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 IL20Q9NYY1 176 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 KLHL13Q9P2N7 655 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 IL20RAQ9UHF4 553 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 B3GALT5Q9Y2C3 310 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 FREM1Q5H8C1 2179 aa13.63□□□□□ -0.23
LSM1-203ENST00000520755 FAM90A27PA6NNH2 459 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 BLOC1S5-TXNDC5H3BN57 136 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 TRAF3IP2O43734 574 aaPredicted RBP13.62□□□□□ -0.23
LSM1-203ENST00000520755 EIF1BO60739 113 aaKnown RBP13.62□□□□□ -0.23
LSM1-203ENST00000520755 CYTIPO60759 359 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 SNAP29O95721 258 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 ADORA3P0DMS8 318 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 HLA-DOBP13765 273 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 BMP5P22003 454 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 CTSSP25774 331 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 CHRNB4P30926 498 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 POLR2IP36954 125 aaKnown RBP13.62□□□□□ -0.23
LSM1-203ENST00000520755 IL1RL1Q01638 556 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 PUDPQ08623 228 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 RASGEF1BQ0VAM2 473 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 ZP4Q12836 540 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 COX10Q12887 443 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 RNPS1Q15287 305 aaKnown RBP13.62□□□□□ -0.23
LSM1-203ENST00000520755 CDSNQ15517 529 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 GTF2IRD2BQ6EKJ0 949 aa13.62□□□□□ -0.23
LSM1-203ENST00000520755 XKRXQ6PP77 449 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms