RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ARL5BQ96KC2 179 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 SLC38A1Q9H2H9 487 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 SLC6A20Q9NP91 592 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 MED17Q9NVC6 651 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 M0R036 132 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 HCRTR1O43613 425 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 NTN1O95631 604 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 SYPP08247 313 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 NR2C1P13056 603 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 HIST1H1CP16403 213 aaKnown RBP10.79□□□□□ -0.68
SYNPO-204ENST00000519664 CD34P28906 385 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 TNFRSF4P43489 277 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 VEGFCP49767 419 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 MEP1BQ16820 701 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 BAIAP2L2Q6UXY1 529 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 OR4N2Q8NGD1 307 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 ADAMTS18Q8TE60 1221 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 GCDHQ92947 438 aaPredicted RBP10.79□□□□□ -0.68
SYNPO-204ENST00000519664 ZNF566Q969W8 418 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 SEC22AQ96IW7 307 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 ZNF436Q9C0F3 470 aaPredicted RBP10.79□□□□□ -0.68
SYNPO-204ENST00000519664 MFFQ9GZY8 342 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 ACOXLQ9NUZ1 547 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 HHLA2Q9UM44 414 aa10.79□□□□□ -0.68
SYNPO-204ENST00000519664 SGCEO43556 437 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 S100A2P29034 98 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 CRABP1P29762 137 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 CASRP41180 1078 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 HERV-K104P61576 105 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 CAMK2DQ13557 499 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 FGL2Q14314 439 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 KIAA0895LQ68EN5 471 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 NDUFAF7Q7L592 441 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 KCTD20Q7Z5Y7 419 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 IL22RA1Q8N6P7 574 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 PLPP7Q8NBV4 271 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 OR13C9Q8NGT0 318 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 SCGB3A2Q96PL1 93 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 PLEK2Q9NYT0 353 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 TAS2R8Q9NYW2 309 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 C19orf53Q9UNZ5 99 aaPredicted RBP10.78□□□□□ -0.68
SYNPO-204ENST00000519664 PRSS44E7EML9 344 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 FARS2O95363 451 aaKnown RBP10.78□□□□□ -0.68
SYNPO-204ENST00000519664 SLC2A1P11166 492 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 MYF5P13349 255 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 SPNP16150 400 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 HTR3AP46098 478 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 GLYR1Q49A26 553 aaPredicted RBP10.78□□□□□ -0.68
SYNPO-204ENST00000519664 DMRTC1Q5HYR2 192 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 SLC16A12Q6ZSM3 486 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 PRSS41Q7RTY9 318 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 SLC35F3Q8IY50 421 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 ZNF565Q8N9K5 539 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 S100PBPQ96BU1 408 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 DOK1Q99704 481 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 TCEAL2Q9H3H9 227 aaPredicted RBP10.78□□□□□ -0.68
SYNPO-204ENST00000519664 ERVMER34-1Q9H9K5 563 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 GPR55Q9Y2T6 319 aaPredicted RBP10.78□□□□□ -0.68
SYNPO-204ENST00000519664 SLC33A1O00400 549 aaPredicted RBP10.78□□□□□ -0.68
SYNPO-204ENST00000519664 CTNSO60931 367 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 UTS2O95399 124 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 LCATP04180 440 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 TCRBP04435 133 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 PRPH2P23942 346 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 ZNF84P51523 738 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 FXYD4P59646 89 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 FAM76BQ5HYJ3 339 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 ADGRF3Q8IZF5 1079 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 OR14L1PQ8NHC6 308 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 ZFAND1Q8TCF1 268 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 TCTN2Q96GX1 697 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 ASB4Q9Y574 426 aa10.78□□□□□ -0.68
SYNPO-204ENST00000519664 TRBV11-1A0A0K0K1C0 115 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 AGPAT2O15120 278 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 APOC1P02654 83 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 CD14P08571 375 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 GLP1RP43220 463 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 RRAS2P62070 204 aaPredicted RBP10.77□□□□□ -0.68
SYNPO-204ENST00000519664 CBFBQ13951 182 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 TMEM176BQ3YBM2 270 aaPredicted RBP10.77□□□□□ -0.68
SYNPO-204ENST00000519664 LIPNQ5VXI9 398 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 ALKAL2Q6UX46 152 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 P4HA3Q7Z4N8 544 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 TPRA1Q86W33 373 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 IL17RCQ8NAC3 791 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 PNPLA2Q96AD5 504 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 EMC6Q9BV81 110 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 ZNF442Q9H7R0 627 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 WASH6PQ9NQA3 447 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 ABRACLQ9P1F3 81 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 LY75O60449 1722 aa10.77□□□□□ -0.68
SYNPO-204ENST00000519664 TMEM129A0AVI4 362 aa10.77□□□□□ -0.69
SYNPO-204ENST00000519664 CHP2O43745 196 aa10.77□□□□□ -0.69
SYNPO-204ENST00000519664 SC5DO75845 299 aa10.77□□□□□ -0.69
SYNPO-204ENST00000519664 SIX6O95475 246 aa10.77□□□□□ -0.69
SYNPO-204ENST00000519664 RAB3AP20336 220 aa10.77□□□□□ -0.69
SYNPO-204ENST00000519664 SLC6A8P48029 635 aa10.77□□□□□ -0.69
SYNPO-204ENST00000519664 OR1D5P58170 312 aa10.77□□□□□ -0.69
SYNPO-204ENST00000519664 C9orf135Q5VTT2 229 aa10.77□□□□□ -0.69
SYNPO-204ENST00000519664 EIF5AL1Q6IS14 154 aaKnown RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms