RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 CIB4A0PJX0 185 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 PLA2G10O15496 165 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 ECI2O75521 394 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 REC8O95072 547 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 LAMP2P13473 410 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 NPBWR2P48146 333 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 CCNG1P51959 295 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 PLK1P53350 603 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 CHRNB3Q05901 458 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 AIMP2Q13155 320 aaKnown RBP-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 PCLAFQ15004 111 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 ZKSCAN8Q15776 578 aaPredicted RBP-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 POU2AF1Q16633 256 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 TSTQ16762 297 aaKnown RBP-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 SMU1Q2TAY7 513 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 SLC25A52Q3SY17 297 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 LRRC73Q5JTD7 316 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 LDLRAD2Q5SZI1 272 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 FAM131AQ6UXB0 335 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 CAMKMTQ7Z624 323 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 TTC30BQ8N4P2 665 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 LINC00469Q8N7U9 141 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 TTLQ8NG68 377 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 SLC25A44Q96H78 314 aaPredicted RBP-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 CXorf58Q96LI9 332 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 NTMT1Q9BV86 223 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 ITPAQ9BY32 194 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 SLC26A1Q9H2B4 701 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 METTL7AQ9H8H3 244 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 FANCEQ9HB96 536 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 POPDC2Q9HBU9 364 aa-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 DCAF13Q9NV06 445 aaKnown RBP-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 CSDC2Q9Y534 153 aaKnown RBP-2.33□□□□□ -2.78
RNU6-539P-201ENST00000516665 MED12Q93074 2177 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 EDDM13A0A1B0GTR0 161 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 A0A1W2PPM0 123 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 GOLGA6L4A6NEF3 574 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 CCER2I3L3R5 266 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 DNALI1O14645 258 aaPredicted RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 PPIHO43447 177 aaKnown RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 TM7SF2O76062 418 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 OR8U9P0C7N5 309 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 SMIM10L1P0DMW3 83 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 THRAP10827 490 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 ZNF7P17097 686 aaPredicted RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 HLA-DMAP28067 261 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 BLVRBP30043 206 aaPredicted RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 STAT2P52630 851 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 FZD2Q14332 565 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 GUSBP1Q15486 140 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 TRADDQ15628 312 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 PDCD2Q16342 344 aaPredicted RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 CLPPQ16740 277 aaPredicted RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 C15orf59Q2T9L4 293 aaPredicted RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 TMEM176BQ3YBM2 270 aaPredicted RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 SPOUT1Q5T280 376 aaKnown RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 DNAJC24Q6P3W2 148 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 Q6ZTI0 123 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 CREBRFQ8IUR6 639 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 MSRB3Q8IXL7 192 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 LFNGQ8NES3 379 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 OR11H6Q8NGC7 330 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 GOT1L1Q8NHS2 421 aaPredicted RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 UCMAQ8WVF2 138 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 TMCO6Q96DC7 493 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 SMIM10Q96HG1 83 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 C20orf144Q9BQM9 153 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 PPDPFQ9H3Y8 114 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 EXOSC4Q9NPD3 245 aaKnown RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 IL37Q9NZH6 218 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 MYEF2Q9P2K5 600 aaKnown RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 NFKBIL1Q9UBC1 381 aaPredicted RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 XPO7Q9UIA9 1087 aaKnown RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 VAX2Q9UIW0 290 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 ZNF490Q9ULM2 529 aaPredicted RBP-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 TRAF3IP3Q9Y228 551 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 TRPV2Q9Y5S1 764 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 SLIT2O94813 1529 aa-2.34□□□□□ -2.78
RNU6-539P-201ENST00000516665 CELSR2Q9HCU4 2923 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 hCG_2014768A0A024R1R8 64 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 IGHV1OR21-1A0A087WYE8 117 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 HLA-DPB1P04440 258 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 CT45A8P0DMV1 189 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 CT45A9P0DMV2 189 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 CPT2P23786 658 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 HTR3AP46098 478 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 RFX3P48380 749 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 ATP1B3P54709 279 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 TAS2R31P59538 309 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 PSG4Q00888 419 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 SPP2Q13103 211 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 TAF12Q16514 161 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 EXOC3L2Q2M3D2 409 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 KLHL40Q2TBA0 621 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 NSUN5P1Q3KNT7 163 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 KLHL12Q53G59 568 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 CT45A2Q5DJT8 189 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 THEM4Q5T1C6 240 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 LIPNQ5VXI9 398 aa-2.35□□□□□ -2.79
RNU6-539P-201ENST00000516665 SLX4IPQ5VYV7 408 aa-2.35□□□□□ -2.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms