RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	C1D	Q13901	141 aa	Known RBP	13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	LARS2	Q15031	903 aa	Known RBP	13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	MAPK11	Q15759	364 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	RNF220	Q5VTB9	566 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	ATG16L1	Q676U5	607 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	REP15	Q6BDI9	236 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	FAHD2B	Q6P2I3	314 aa	Predicted RBP	13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	PEG10	Q86TG7	708 aa	Known RBP	13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	LRRC34	Q8IZ02	419 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	TEX29	Q8N6K0	151 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	PIK3C3	Q8NEB9	887 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	FAHD2A	Q96GK7	314 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	JMJD8	Q96S16	334 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	PTDSS2	Q9BVG9	487 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	RBM4	Q9BWF3	364 aa	Known RBP	13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	B3GNT2	Q9NY97	397 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	CALML5	Q9NZT1	146 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	B3GAT1	Q9P2W7	334 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	P2RX2	Q9UBL9	471 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	LGALS13	Q9UHV8	139 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	NOX1	Q9Y5S8	564 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	DSPP	Q9NZW4	1301 aa		13.55	□□□□□ -0.24
LMNA-223	ENST00000515459	AKAP8	O43823	692 aa	Known RBP	13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	KRT75	O95678	551 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	GSN	P06396	782 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	TCN1	P20061	433 aa	Predicted RBP	13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	GLRX	P35754	106 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	ETV4	P43268	484 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	CRISP3	P54108	245 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	TMEM33	P57088	247 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	EGR4	Q05215	589 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	MSMP	Q1L6U9	139 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	GSG1	Q2KHT4	349 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	CLIP4	Q8N3C7	705 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	MS4A3	Q96HJ5	214 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	TEX37	Q96LM6	180 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	OR52E6	Q96RD3	313 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	SYT3	Q9BQG1	590 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	ARMC7	Q9H6L4	198 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	TREM2	Q9NZC2	230 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	SEC14L4	Q9UDX3	406 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	ZNF232	Q9UNY5	417 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	ZNF443	Q9Y2A4	671 aa	Predicted RBP	13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	RAP2C	Q9Y3L5	183 aa		13.54	□□□□□ -0.24
LMNA-223	ENST00000515459	TRAV20	A0A0B4J274	112 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	AIM2	O14862	343 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	WNT9B	O14905	357 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	PNP	P00491	289 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	HLA-H	P01893	362 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	SERPINE1	P05121	402 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	BCHE	P06276	602 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	CD79A	P11912	226 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	ZNF35	P13682	527 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	CREB1	P16220	341 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	EPHA1	P21709	976 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	ALDH3B1	P43353	468 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	LIMS1	P48059	325 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	RPL14	P50914	215 aa	Known RBP	13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	ARFIP2	P53365	341 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	NME5	P56597	212 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	ABCE1	P61221	599 aa	Known RBP	13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	UFM1	P61960	85 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	CHI3L2	Q15782	390 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	TRMT5	Q32P41	509 aa	Known RBP	13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	SERPINA11	Q86U17	422 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	TMEM123	Q8N131	208 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	KTI12	Q96EK9	354 aa	Predicted RBP	13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	PKNOX2	Q96KN3	472 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	OR2M2	Q96R28	347 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	SPATA9	Q9BWV2	254 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	NUF2	Q9BZD4	464 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	CACYBP	Q9HB71	228 aa	Known RBP	13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	ZNF275	Q9NSD4	429 aa	Predicted RBP	13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	CHST2	Q9Y4C5	530 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	MEGF8	Q7Z7M0	2845 aa		13.53	□□□□□ -0.24
LMNA-223	ENST00000515459	WDR91	A4D1P6	747 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459		M0R3G1	203 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	PPIH	O43447	177 aa	Known RBP	13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	OR2T1	O43869	369 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	TYROBP	O43914	113 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	FZD7	O75084	574 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	ANPEP	P15144	967 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	ZNF14	P17017	642 aa	Predicted RBP	13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	SEC24C	P53992	1094 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	LMO4	P61968	165 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	RPS23	P62266	143 aa	Known RBP	13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	MRPS11	P82912	194 aa	Known RBP	13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	MYBPC1	Q00872	1141 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	GALK2	Q01415	458 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	PIGF	Q07326	219 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	IFFO1	Q0D2I5	559 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	FAM69A	Q5T7M9	428 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	GKAP1	Q5VSY0	366 aa	Predicted RBP	13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	OGFOD2	Q6N063	350 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	SLC38A5	Q8WUX1	472 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	YIPF5	Q969M3	257 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	ZNF416	Q9BWM5	594 aa		13.52	□□□□□ -0.25
LMNA-223	ENST00000515459	C20orf27	Q9GZN8	174 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms